Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:62905842-63985943

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col4a1m1 1 25511110 to 62907723 37396613 QTL collagen, type IV, alpha 1 modifier 1
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Idd5.1 1 57689117 to 62907723 5218606 QTL insulin dependent diabetes susceptibility 5.1
Bswt 1 58233965 to 63884110 5650145 heritable phenotypic marker belly spot with white toes
Gm35252 1 62906176 to 62956594 50418 - lncRNA gene predicted gene, 35252
Ssta1 1 62907596 to 62907723 127 QTL susceptibility to Salmonella typhimurium antigens 1
D1Mit303 1 62907596 to 62907723 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 303
Tssr96 1 62931168 to 62931171 3 + TSS region transcription start site region 96
Tssr97 1 62938387 to 62938393 6 + TSS region transcription start site region 97
Gm38513 1 62974790 to 62981429 6639 - lncRNA gene predicted gene, 38513
D1Mit378 1 63023833 to 63023955 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 378
D1Dcr40 1 63023866 to 63023965 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 40
Gm44468 1 63025742 to 63025846 104 + miRNA gene predicted gene, 44468
Gm24942 1 63032706 to 63032819 113 + snoRNA gene predicted gene, 24942
Rps13-ps7 1 63038214 to 63038581 367 + pseudogene ribosomal protein S13, pseudogene 7
Ino80d 1 63047801 to 63114267 66466 - protein coding gene INO80 complex subunit D
Rps27-ps1 1 63073774 to 63074019 245 + pseudogene ribosomal protein S27, pseudogene 1
D1Dcr41 1 63087223 to 63087325 102 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 41
Tssr11877 1 63088481 to 63088495 14 - TSS region transcription start site region 11877
Tssr11878 1 63095996 to 63096000 4 - TSS region transcription start site region 11878
Tssr7048 1 63103149 to 63103150 1 + TSS region transcription start site region 7048
Tssr11879 1 63108028 to 63108032 4 - TSS region transcription start site region 11879
Tssr7049 1 63113115 to 63113131 16 + TSS region transcription start site region 7049
Cpgi312 1 63113125 to 63114806 1681 CpG island CpG island 312
Tssr11880 1 63114282 to 63114345 63 - TSS region transcription start site region 11880
Tssr7050 1 63114399 to 63114411 12 + TSS region transcription start site region 7050
Tssr7051 1 63114415 to 63114473 58 + TSS region transcription start site region 7051
Ino80dos 1 63114471 to 63158295 43824 + lincRNA gene INO80 complex subunit D, opposite strand
Tssr11881 1 63114516 to 63114539 23 - TSS region transcription start site region 11881
Tssr7052 1 63114733 to 63114765 32 + TSS region transcription start site region 7052
Tssr7053 1 63115050 to 63115055 5 + TSS region transcription start site region 7053
Gm20342 1 63117118 to 63126837 9719 + lincRNA gene predicted gene, 20342
Ndufs1 1 63143592 to 63176822 33230 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S1
Gm24557 1 63161855 to 63161943 88 + miRNA gene predicted gene, 24557
Cpgi313 1 63176462 to 63177546 1084 CpG island CpG island 313
Tssr11882 1 63176653 to 63176707 54 - TSS region transcription start site region 11882
Tssr11883 1 63176805 to 63176817 12 - TSS region transcription start site region 11883
Tssr7054 1 63176818 to 63176919 101 + TSS region transcription start site region 7054
Eef1b2 1 63176831 to 63180486 3655 + protein coding gene eukaryotic translation elongation factor 1 beta 2
Tssr7055 1 63177051 to 63177054 3 + TSS region transcription start site region 7055
Tssr7056 1 63177091 to 63177096 5 + TSS region transcription start site region 7056
Tssr7057 1 63177119 to 63177145 26 + TSS region transcription start site region 7057
Tssr7058 1 63177746 to 63177760 14 + TSS region transcription start site region 7058
Gm27390 1 63177983 to 63178158 175 + unclassified non-coding RNA gene predicted gene, 27390
Tssr7059 1 63178460 to 63178480 20 + TSS region transcription start site region 7059
Gm26457 1 63178686 to 63178720 34 + snoRNA gene predicted gene, 26457
Tssr11884 1 63178858 to 63178896 38 - TSS region transcription start site region 11884
Snora41 1 63179023 to 63179135 112 + snoRNA gene small nucleolar RNA, H/ACA box 41
Gpr1 1 63182691 to 63214543 31852 - protein coding gene G protein-coupled receptor 1
Gm27512 1 63198031 to 63198156 125 + miRNA gene predicted gene, 27512
Cpgi314 1 63200183 to 63200626 443 CpG island CpG island 314
Platr12 1 63200313 to 63207967 7654 + unclassified non-coding RNA gene pluripotency associated transcript 12
Tssr7060 1 63200567 to 63200578 11 + TSS region transcription start site region 7060
Tssr7061 1 63200581 to 63200592 11 + TSS region transcription start site region 7061
Tssr7062 1 63200593 to 63200641 48 + TSS region transcription start site region 7062
Tssr11885 1 63214226 to 63214244 18 - TSS region transcription start site region 11885
Tssr11886 1 63214247 to 63214264 17 - TSS region transcription start site region 11886
Tssr11887 1 63214275 to 63214286 11 - TSS region transcription start site region 11887
Tssr11888 1 63214309 to 63214322 13 - TSS region transcription start site region 11888
1700039I01Rik 1 63248021 to 63248499 478 - lncRNA gene RIKEN cDNA 1700039I01 gene
Cpgi315 1 63248104 to 63248795 691 CpG island CpG island 315
Gm11608 1 63266848 to 63273120 6272 - lincRNA gene predicted gene 11608
Cpgi316 1 63272786 to 63274030 1244 CpG island CpG island 316
Tssr11889 1 63273096 to 63273111 15 - TSS region transcription start site region 11889
Tssr11890 1 63273112 to 63273136 24 - TSS region transcription start site region 11890
Tssr7063 1 63273203 to 63273230 27 + TSS region transcription start site region 7063
Gm24513 1 63273226 to 63273363 137 - miRNA gene predicted gene, 24513
Tssr7064 1 63273261 to 63273275 14 + TSS region transcription start site region 7064
Zdbf2 1 63273265 to 63314576 41311 + protein coding gene zinc finger, DBF-type containing 2
Tssr7065 1 63296207 to 63296212 5 + TSS region transcription start site region 7065
Gm23448 1 63300280 to 63300383 103 - snRNA gene predicted gene, 23448
Cpgi317 1 63309067 to 63309968 901 CpG island CpG island 317
Tssr7066 1 63323944 to 63323962 18 + TSS region transcription start site region 7066
D1Mit177 1 63356619 to 63356756 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 177
Gm11606 1 63357434 to 63358050 616 - pseudogene predicted gene 11606
Gm11605 1 63364720 to 63365365 645 - pseudogene predicted gene 11605
Gm35393 1 63431305 to 63436457 5152 - lncRNA gene predicted gene, 35393
Tssr11891 1 63442243 to 63442257 14 - TSS region transcription start site region 11891
Tssr7067 1 63442494 to 63442499 5 + TSS region transcription start site region 7067
Cpgi318 1 63445272 to 63446854 1582 CpG island CpG island 318
Tssr7068 1 63445715 to 63445765 50 + TSS region transcription start site region 7068
Tssr7069 1 63445842 to 63445943 101 + TSS region transcription start site region 7069
Adam23 1 63445882 to 63596104 150222 + protein coding gene a disintegrin and metallopeptidase domain 23
Tssr7070 1 63445948 to 63445980 32 + TSS region transcription start site region 7070
Tssr7071 1 63446006 to 63446020 14 + TSS region transcription start site region 7071
Tssr7072 1 63446085 to 63446090 5 + TSS region transcription start site region 7072
Tssr7073 1 63446175 to 63446185 10 + TSS region transcription start site region 7073
Tssr7074 1 63528759 to 63528768 9 + TSS region transcription start site region 7074
Gm22281 1 63575488 to 63575590 102 - snRNA gene predicted gene, 22281
Tssr7075 1 63595815 to 63595820 5 + TSS region transcription start site region 7075
Cpgi319 1 63614319 to 63614700 381 CpG island CpG island 319
Gm39653 1 63615968 to 63620819 4851 + protein coding gene predicted gene, 39653
Dytn 1 63622851 to 63686927 64076 - protein coding gene dystrotelin
Cpgi320 1 63664687 to 63664867 180 CpG island CpG island 320
Gm12748 1 63671468 to 63671971 503 + pseudogene predicted gene 12748
Tssr11892 1 63686904 to 63686917 13 - TSS region transcription start site region 11892
D1Mit466 1 63695853 to 63695997 144 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-466
Mdh1b 1 63698827 to 63730318 31491 - protein coding gene malate dehydrogenase 1B, NAD (soluble)
Tssr11893 1 63730306 to 63730342 36 - TSS region transcription start site region 11893
Cpgi321 1 63730329 to 63730878 549 CpG island CpG island 321
Tssr11894 1 63730346 to 63730354 8 - TSS region transcription start site region 11894
Fastkd2 1 63730599 to 63753385 22786 + protein coding gene FAST kinase domains 2
Tssr7076 1 63730616 to 63730657 41 + TSS region transcription start site region 7076
4933402D24Rik 1 63754909 to 63769267 14358 - protein coding gene RIKEN cDNA 4933402D24 gene
Yaa2 1 63815531 to 63815680 149 QTL Y-linked autoimmune acceleration QTL 2
Sle7 1 63815531 to 63815680 149 QTL systematic lupus erythematosus susceptibility 7
D1Mit5.1 1 63815531 to 63815680 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 5.1
Gm13751 1 63844827 to 63845578 751 - pseudogene predicted gene 13751
D1Mit300 1 63880843 to 63880959 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 300
D1Mit480 1 63883943 to 63884110 167 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 480
Gm13754 1 63917848 to 63935932 18084 + pseudogene predicted gene 13754
Gm13749 1 63964727 to 63968999 4272 + lincRNA gene predicted gene 13749
Abbp1 1 120601949 to 62907596 -57694353 QTL A/J and C57BL/6 blood pressure 1
Ssial1 1 153681816 to 63880843 -89800973 QTL susceptibility to sialadenitis 1
Hcs9 1 189571420 to 63815531 -125755889 QTL hepatocarcinogenesis susceptibility 9