Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:62818214-63258581

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col4a1m1 1 25511110 to 62907723 37396613 QTL collagen, type IV, alpha 1 modifier 1
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Idd5.1 1 57689117 to 62907723 5218606 QTL insulin dependent diabetes susceptibility 5.1
Nrp2 1 62703317 to 62818692 115375 + protein coding gene neuropilin 2
Tssr7047 1 62818241 to 62818263 22 + TSS region transcription start site region 7047
Gm4208 1 62821355 to 62832370 11015 - lincRNA gene predicted gene 4208
Tssr11876 1 62832211 to 62832219 8 - TSS region transcription start site region 11876
Gm35120 1 62836858 to 62839810 2952 + lncRNA gene predicted gene, 35120
Gm39652 1 62840311 to 62844365 4054 - lncRNA gene predicted gene, 39652
Gm35252 1 62906176 to 62956594 50418 - lncRNA gene predicted gene, 35252
Ssta1 1 62907596 to 62907723 127 QTL susceptibility to Salmonella typhimurium antigens 1
D1Mit303 1 62907596 to 62907723 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 303
Tssr96 1 62931168 to 62931171 3 + TSS region transcription start site region 96
Tssr97 1 62938387 to 62938393 6 + TSS region transcription start site region 97
Gm38513 1 62974790 to 62981429 6639 - lncRNA gene predicted gene, 38513
D1Mit378 1 63023833 to 63023955 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 378
D1Dcr40 1 63023866 to 63023965 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 40
Gm44468 1 63025742 to 63025846 104 + miRNA gene predicted gene, 44468
Gm24942 1 63032706 to 63032819 113 + snoRNA gene predicted gene, 24942
Rps13-ps7 1 63038214 to 63038581 367 + pseudogene ribosomal protein S13, pseudogene 7
Ino80d 1 63047801 to 63114267 66466 - protein coding gene INO80 complex subunit D
Rps27-ps1 1 63073774 to 63074019 245 + pseudogene ribosomal protein S27, pseudogene 1
D1Dcr41 1 63087223 to 63087325 102 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 41
Tssr11877 1 63088481 to 63088495 14 - TSS region transcription start site region 11877
Tssr11878 1 63095996 to 63096000 4 - TSS region transcription start site region 11878
Tssr7048 1 63103149 to 63103150 1 + TSS region transcription start site region 7048
Tssr11879 1 63108028 to 63108032 4 - TSS region transcription start site region 11879
Tssr7049 1 63113115 to 63113131 16 + TSS region transcription start site region 7049
Cpgi312 1 63113125 to 63114806 1681 CpG island CpG island 312
Tssr11880 1 63114282 to 63114345 63 - TSS region transcription start site region 11880
Tssr7050 1 63114399 to 63114411 12 + TSS region transcription start site region 7050
Tssr7051 1 63114415 to 63114473 58 + TSS region transcription start site region 7051
Ino80dos 1 63114471 to 63158295 43824 + lincRNA gene INO80 complex subunit D, opposite strand
Tssr11881 1 63114516 to 63114539 23 - TSS region transcription start site region 11881
Tssr7052 1 63114733 to 63114765 32 + TSS region transcription start site region 7052
Tssr7053 1 63115050 to 63115055 5 + TSS region transcription start site region 7053
Gm20342 1 63117118 to 63126837 9719 + lincRNA gene predicted gene, 20342
Ndufs1 1 63143592 to 63176822 33230 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S1
Gm24557 1 63161855 to 63161943 88 + miRNA gene predicted gene, 24557
Cpgi313 1 63176462 to 63177546 1084 CpG island CpG island 313
Tssr11882 1 63176653 to 63176707 54 - TSS region transcription start site region 11882
Tssr11883 1 63176805 to 63176817 12 - TSS region transcription start site region 11883
Tssr7054 1 63176818 to 63176919 101 + TSS region transcription start site region 7054
Eef1b2 1 63176831 to 63180486 3655 + protein coding gene eukaryotic translation elongation factor 1 beta 2
Tssr7055 1 63177051 to 63177054 3 + TSS region transcription start site region 7055
Tssr7056 1 63177091 to 63177096 5 + TSS region transcription start site region 7056
Tssr7057 1 63177119 to 63177145 26 + TSS region transcription start site region 7057
Tssr7058 1 63177746 to 63177760 14 + TSS region transcription start site region 7058
Gm27390 1 63177983 to 63178158 175 + unclassified non-coding RNA gene predicted gene, 27390
Tssr7059 1 63178460 to 63178480 20 + TSS region transcription start site region 7059
Gm26457 1 63178686 to 63178720 34 + snoRNA gene predicted gene, 26457
Tssr11884 1 63178858 to 63178896 38 - TSS region transcription start site region 11884
Snora41 1 63179023 to 63179135 112 + snoRNA gene small nucleolar RNA, H/ACA box 41
Gpr1 1 63182691 to 63214543 31852 - protein coding gene G protein-coupled receptor 1
Gm27512 1 63198031 to 63198156 125 + miRNA gene predicted gene, 27512
Cpgi314 1 63200183 to 63200626 443 CpG island CpG island 314
Platr12 1 63200313 to 63207967 7654 + unclassified non-coding RNA gene pluripotency associated transcript 12
Tssr7060 1 63200567 to 63200578 11 + TSS region transcription start site region 7060
Tssr7061 1 63200581 to 63200592 11 + TSS region transcription start site region 7061
Tssr7062 1 63200593 to 63200641 48 + TSS region transcription start site region 7062
Tssr11885 1 63214226 to 63214244 18 - TSS region transcription start site region 11885
Tssr11886 1 63214247 to 63214264 17 - TSS region transcription start site region 11886
Tssr11887 1 63214275 to 63214286 11 - TSS region transcription start site region 11887
Tssr11888 1 63214309 to 63214322 13 - TSS region transcription start site region 11888
1700039I01Rik 1 63248021 to 63248499 478 - lncRNA gene RIKEN cDNA 1700039I01 gene
Cpgi315 1 63248104 to 63248795 691 CpG island CpG island 315
Abbp1 1 120601949 to 62907596 -57694353 QTL A/J and C57BL/6 blood pressure 1