MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 1:6244030-6474537

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20 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Rb1cc1	1	6214662 to 6276374	61712	+	protein coding gene	RB1-inducible coiled-coil 1
Tssr5827	1	6249311 to 6249329	18	+	TSS region	transcription start site region 5827
Tssr5828	1	6249702 to 6249714	12	+	TSS region	transcription start site region 5828
Tssr5829	1	6267083 to 6267088	5	+	TSS region	transcription start site region 5829
Tssr2	1	6324643 to 6324646	3	+	TSS region	transcription start site region 2
Cpgi17	1	6359030 to 6359537	507		CpG island	CpG island 17
Alkal1	1	6359331 to 6394731	35400	+	protein coding gene	ALK and LTK ligand 1
Gm46083	1	6377512 to 6382119	4607	-	lncRNA gene	predicted gene, 46083
Tssr5830	1	6380272 to 6380282	10	+	TSS region	transcription start site region 5830
Gm2147	1	6380394 to 6381032	638	+	pseudogene	predicted gene 2147
Tssr10907	1	6382543 to 6382545	2	-	TSS region	transcription start site region 10907
Gm7417	1	6382634 to 6383106	472	-	pseudogene	predicted gene 7417
Cpgi18	1	6382766 to 6383291	525		CpG island	CpG island 18
Tssr10908	1	6383047 to 6383058	11	-	TSS region	transcription start site region 10908
Gm19026	1	6429658 to 6441296	11638	-	pseudogene	predicted gene, 19026
Cpgi19	1	6440858 to 6441884	1026		CpG island	CpG island 19
Tssr10909	1	6443557 to 6443567	10	-	TSS region	transcription start site region 10909
Tssr5831	1	6453818 to 6453830	12	+	TSS region	transcription start site region 5831
Tssr5832	1	6453842 to 6453853	11	+	TSS region	transcription start site region 5832
Tssr10910	1	6454279 to 6454305	26	-	TSS region	transcription start site region 10910