Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:61840839-63481716

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col4a1m1 1 25511110 to 62907723 37396613 QTL collagen, type IV, alpha 1 modifier 1
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Idd5.1 1 57689117 to 62907723 5218606 QTL insulin dependent diabetes susceptibility 5.1
Pard3b 1 61638824 to 62642284 1003460 + protein coding gene par-3 family cell polarity regulator beta
Pard3bos1 1 61767415 to 61851540 84125 - antisense lncRNA gene par-3 family cell polarity regulator beta, opposite strand 1
Tssr11869 1 61851468 to 61851475 7 - TSS region transcription start site region 11869
Tssr11870 1 61851484 to 61851497 13 - TSS region transcription start site region 11870
Tssr6977 1 61874286 to 61874290 4 + TSS region transcription start site region 6977
Tssr6978 1 61880329 to 61880333 4 + TSS region transcription start site region 6978
Gm29640 1 61980930 to 61981207 277 - pseudogene predicted gene 29640
Gm29641 1 62095081 to 62095339 258 - pseudogene predicted gene 29641
Pard3bos2 1 62131195 to 62136109 4914 - antisense lncRNA gene par-3 family cell polarity regulator beta, opposite strand 2
Gm38351 1 62247153 to 62249670 2517 + unclassified gene predicted gene, 38351
Pard3bos3 1 62456725 to 62499261 42536 - antisense lncRNA gene par-3 family cell polarity regulator beta, opposite strand 3
Tssr6979 1 62483394 to 62483410 16 + TSS region transcription start site region 6979
Gm34881 1 62513330 to 62526071 12741 - lncRNA gene predicted gene, 34881
Tssr6980 1 62522635 to 62522640 5 + TSS region transcription start site region 6980
Gm29084 1 62534491 to 62535942 1451 - antisense lncRNA gene predicted gene 29084
Gm11600 1 62656695 to 62657788 1093 - pseudogene predicted gene 11600
Tssr6981 1 62660813 to 62660814 1 + TSS region transcription start site region 6981
Gm11599 1 62660839 to 62661716 877 + pseudogene predicted gene 11599
Cpgi309 1 62702698 to 62703853 1155 CpG island CpG island 309
Tssr11871 1 62703242 to 62703247 5 - TSS region transcription start site region 11871
Tssr6982 1 62703307 to 62703317 10 + TSS region transcription start site region 6982
Nrp2 1 62703317 to 62818692 115375 + protein coding gene neuropilin 2
Tssr6983 1 62703332 to 62703351 19 + TSS region transcription start site region 6983
Tssr6984 1 62703382 to 62703399 17 + TSS region transcription start site region 6984
Tssr6985 1 62703428 to 62703439 11 + TSS region transcription start site region 6985
Tssr6986 1 62703442 to 62703457 15 + TSS region transcription start site region 6986
Tssr6987 1 62703667 to 62703702 35 + TSS region transcription start site region 6987
Tssr11872 1 62703780 to 62703831 51 - TSS region transcription start site region 11872
Tssr6988 1 62703916 to 62703934 18 + TSS region transcription start site region 6988
Tssr6989 1 62703946 to 62703982 36 + TSS region transcription start site region 6989
Tssr6990 1 62703987 to 62703998 11 + TSS region transcription start site region 6990
D1Mit379 1 62704450 to 62704536 86 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 379
Cpgi310 1 62705435 to 62707818 2383 CpG island CpG island 310
Tssr6991 1 62706326 to 62706350 24 + TSS region transcription start site region 6991
Tssr6992 1 62708800 to 62708829 29 + TSS region transcription start site region 6992
Tssr6993 1 62709036 to 62709049 13 + TSS region transcription start site region 6993
Tssr6994 1 62711683 to 62711690 7 + TSS region transcription start site region 6994
Gm29083 1 62714723 to 62718073 3350 - antisense lncRNA gene predicted gene 29083
Tssr6995 1 62718916 to 62718927 11 + TSS region transcription start site region 6995
Tssr6996 1 62718982 to 62719007 25 + TSS region transcription start site region 6996
Tssr6997 1 62719018 to 62719047 29 + TSS region transcription start site region 6997
Tssr6998 1 62725796 to 62725810 14 + TSS region transcription start site region 6998
Tssr6999 1 62726015 to 62726034 19 + TSS region transcription start site region 6999
Tssr7000 1 62726311 to 62726322 11 + TSS region transcription start site region 7000
Tssr7001 1 62726397 to 62726408 11 + TSS region transcription start site region 7001
Tssr7002 1 62726478 to 62726494 16 + TSS region transcription start site region 7002
Tssr7003 1 62726510 to 62726542 32 + TSS region transcription start site region 7003
Tssr7004 1 62726665 to 62726724 59 + TSS region transcription start site region 7004
Tssr7005 1 62726725 to 62726783 58 + TSS region transcription start site region 7005
Tssr7006 1 62726853 to 62726943 90 + TSS region transcription start site region 7006
Tssr7007 1 62726950 to 62726968 18 + TSS region transcription start site region 7007
Tssr7008 1 62726973 to 62727002 29 + TSS region transcription start site region 7008
Tssr7009 1 62727022 to 62727072 50 + TSS region transcription start site region 7009
Tssr7010 1 62727121 to 62727142 21 + TSS region transcription start site region 7010
Tssr7011 1 62727165 to 62727177 12 + TSS region transcription start site region 7011
Tssr11873 1 62729434 to 62729436 2 - TSS region transcription start site region 11873
Tssr7012 1 62730306 to 62730321 15 + TSS region transcription start site region 7012
Tssr7013 1 62730328 to 62730343 15 + TSS region transcription start site region 7013
Tssr7014 1 62735404 to 62735426 22 + TSS region transcription start site region 7014
Tssr11874 1 62735940 to 62735960 20 - TSS region transcription start site region 11874
Tssr7015 1 62738349 to 62738379 30 + TSS region transcription start site region 7015
Tssr7016 1 62738403 to 62738418 15 + TSS region transcription start site region 7016
Tssr7017 1 62738427 to 62738443 16 + TSS region transcription start site region 7017
Tssr7018 1 62743574 to 62743602 28 + TSS region transcription start site region 7018
Tssr7019 1 62750372 to 62750378 6 + TSS region transcription start site region 7019
Tssr7020 1 62754825 to 62754842 17 + TSS region transcription start site region 7020
Tssr7021 1 62758263 to 62758279 16 + TSS region transcription start site region 7021
Tssr7022 1 62762949 to 62762962 13 + TSS region transcription start site region 7022
Tssr7023 1 62764593 to 62764597 4 + TSS region transcription start site region 7023
Tssr7024 1 62768968 to 62769003 35 + TSS region transcription start site region 7024
Tssr7025 1 62769007 to 62769022 15 + TSS region transcription start site region 7025
Tssr7026 1 62770927 to 62770937 10 + TSS region transcription start site region 7026
Tssr7027 1 62778057 to 62778095 38 + TSS region transcription start site region 7027
4930487H11Rik 1 62790918 to 62794732 3814 - lncRNA gene RIKEN cDNA 4930487H11 gene
Tssr7028 1 62792407 to 62792452 45 + TSS region transcription start site region 7028
Tssr7029 1 62795543 to 62795574 31 + TSS region transcription start site region 7029
Cpgi311 1 62795678 to 62796030 352 CpG island CpG island 311
Tssr7030 1 62795969 to 62795984 15 + TSS region transcription start site region 7030
Tssr7031 1 62795986 to 62796000 14 + TSS region transcription start site region 7031
Tssr7032 1 62796032 to 62796078 46 + TSS region transcription start site region 7032
Tssr7033 1 62796111 to 62796200 89 + TSS region transcription start site region 7033
Tssr7034 1 62796218 to 62796229 11 + TSS region transcription start site region 7034
Tssr7035 1 62796289 to 62796294 5 + TSS region transcription start site region 7035
Tssr7036 1 62797291 to 62797310 19 + TSS region transcription start site region 7036
Tssr7037 1 62798097 to 62798151 54 + TSS region transcription start site region 7037
Tssr7038 1 62798201 to 62798215 14 + TSS region transcription start site region 7038
Tssr7039 1 62798275 to 62798297 22 + TSS region transcription start site region 7039
Tssr7040 1 62798399 to 62798411 12 + TSS region transcription start site region 7040
Tssr11875 1 62798602 to 62798627 25 - TSS region transcription start site region 11875
Gm37121 1 62809302 to 62811857 2555 + unclassified gene predicted gene, 37121
Tssr7041 1 62809844 to 62809860 16 + TSS region transcription start site region 7041
Tssr7042 1 62810092 to 62810111 19 + TSS region transcription start site region 7042
Tssr7043 1 62810113 to 62810144 31 + TSS region transcription start site region 7043
Tssr7044 1 62816299 to 62816320 21 + TSS region transcription start site region 7044
Tssr7045 1 62816654 to 62816666 12 + TSS region transcription start site region 7045
Tssr7046 1 62816813 to 62816826 13 + TSS region transcription start site region 7046
Tssr7047 1 62818241 to 62818263 22 + TSS region transcription start site region 7047
Gm4208 1 62821355 to 62832370 11015 - lincRNA gene predicted gene 4208
Tssr11876 1 62832211 to 62832219 8 - TSS region transcription start site region 11876
Gm35120 1 62836858 to 62839810 2952 + lncRNA gene predicted gene, 35120
Gm39652 1 62840311 to 62844365 4054 - lncRNA gene predicted gene, 39652
Gm35252 1 62906176 to 62956594 50418 - lncRNA gene predicted gene, 35252
D1Mit303 1 62907596 to 62907723 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 303
Ssta1 1 62907596 to 62907723 127 QTL susceptibility to Salmonella typhimurium antigens 1
Tssr96 1 62931168 to 62931171 3 + TSS region transcription start site region 96
Tssr97 1 62938387 to 62938393 6 + TSS region transcription start site region 97
Gm38513 1 62974790 to 62981429 6639 - lncRNA gene predicted gene, 38513
D1Mit378 1 63023833 to 63023955 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 378
D1Dcr40 1 63023866 to 63023965 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 40
Gm44468 1 63025742 to 63025846 104 + miRNA gene predicted gene, 44468
Gm24942 1 63032706 to 63032819 113 + snoRNA gene predicted gene, 24942
Rps13-ps7 1 63038214 to 63038581 367 + pseudogene ribosomal protein S13, pseudogene 7
Ino80d 1 63047801 to 63114267 66466 - protein coding gene INO80 complex subunit D
Rps27-ps1 1 63073774 to 63074019 245 + pseudogene ribosomal protein S27, pseudogene 1
D1Dcr41 1 63087223 to 63087325 102 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 41
Tssr11877 1 63088481 to 63088495 14 - TSS region transcription start site region 11877
Tssr11878 1 63095996 to 63096000 4 - TSS region transcription start site region 11878
Tssr7048 1 63103149 to 63103150 1 + TSS region transcription start site region 7048
Tssr11879 1 63108028 to 63108032 4 - TSS region transcription start site region 11879
Tssr7049 1 63113115 to 63113131 16 + TSS region transcription start site region 7049
Cpgi312 1 63113125 to 63114806 1681 CpG island CpG island 312
Tssr11880 1 63114282 to 63114345 63 - TSS region transcription start site region 11880
Tssr7050 1 63114399 to 63114411 12 + TSS region transcription start site region 7050
Tssr7051 1 63114415 to 63114473 58 + TSS region transcription start site region 7051
Ino80dos 1 63114471 to 63158295 43824 + lincRNA gene INO80 complex subunit D, opposite strand
Tssr11881 1 63114516 to 63114539 23 - TSS region transcription start site region 11881
Tssr7052 1 63114733 to 63114765 32 + TSS region transcription start site region 7052
Tssr7053 1 63115050 to 63115055 5 + TSS region transcription start site region 7053
Gm20342 1 63117118 to 63126837 9719 + lincRNA gene predicted gene, 20342
Ndufs1 1 63143592 to 63176822 33230 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S1
Gm24557 1 63161855 to 63161943 88 + miRNA gene predicted gene, 24557
Cpgi313 1 63176462 to 63177546 1084 CpG island CpG island 313
Tssr11882 1 63176653 to 63176707 54 - TSS region transcription start site region 11882
Tssr11883 1 63176805 to 63176817 12 - TSS region transcription start site region 11883
Tssr7054 1 63176818 to 63176919 101 + TSS region transcription start site region 7054
Eef1b2 1 63176831 to 63180486 3655 + protein coding gene eukaryotic translation elongation factor 1 beta 2
Tssr7055 1 63177051 to 63177054 3 + TSS region transcription start site region 7055
Tssr7056 1 63177091 to 63177096 5 + TSS region transcription start site region 7056
Tssr7057 1 63177119 to 63177145 26 + TSS region transcription start site region 7057
Tssr7058 1 63177746 to 63177760 14 + TSS region transcription start site region 7058
Gm27390 1 63177983 to 63178158 175 + unclassified non-coding RNA gene predicted gene, 27390
Tssr7059 1 63178460 to 63178480 20 + TSS region transcription start site region 7059
Gm26457 1 63178686 to 63178720 34 + snoRNA gene predicted gene, 26457
Tssr11884 1 63178858 to 63178896 38 - TSS region transcription start site region 11884
Snora41 1 63179023 to 63179135 112 + snoRNA gene small nucleolar RNA, H/ACA box 41
Gpr1 1 63182691 to 63214543 31852 - protein coding gene G protein-coupled receptor 1
Gm27512 1 63198031 to 63198156 125 + miRNA gene predicted gene, 27512
Cpgi314 1 63200183 to 63200626 443 CpG island CpG island 314
Platr12 1 63200313 to 63207967 7654 + unclassified non-coding RNA gene pluripotency associated transcript 12
Tssr7060 1 63200567 to 63200578 11 + TSS region transcription start site region 7060
Tssr7061 1 63200581 to 63200592 11 + TSS region transcription start site region 7061
Tssr7062 1 63200593 to 63200641 48 + TSS region transcription start site region 7062
Tssr11885 1 63214226 to 63214244 18 - TSS region transcription start site region 11885
Tssr11886 1 63214247 to 63214264 17 - TSS region transcription start site region 11886
Tssr11887 1 63214275 to 63214286 11 - TSS region transcription start site region 11887
Tssr11888 1 63214309 to 63214322 13 - TSS region transcription start site region 11888
1700039I01Rik 1 63248021 to 63248499 478 - lncRNA gene RIKEN cDNA 1700039I01 gene
Cpgi315 1 63248104 to 63248795 691 CpG island CpG island 315
Gm11608 1 63266848 to 63273120 6272 - lincRNA gene predicted gene 11608
Cpgi316 1 63272786 to 63274030 1244 CpG island CpG island 316
Tssr11889 1 63273096 to 63273111 15 - TSS region transcription start site region 11889
Tssr11890 1 63273112 to 63273136 24 - TSS region transcription start site region 11890
Tssr7063 1 63273203 to 63273230 27 + TSS region transcription start site region 7063
Gm24513 1 63273226 to 63273363 137 - miRNA gene predicted gene, 24513
Tssr7064 1 63273261 to 63273275 14 + TSS region transcription start site region 7064
Zdbf2 1 63273265 to 63314576 41311 + protein coding gene zinc finger, DBF-type containing 2
Tssr7065 1 63296207 to 63296212 5 + TSS region transcription start site region 7065
Gm23448 1 63300280 to 63300383 103 - snRNA gene predicted gene, 23448
Cpgi317 1 63309067 to 63309968 901 CpG island CpG island 317
Tssr7066 1 63323944 to 63323962 18 + TSS region transcription start site region 7066
D1Mit177 1 63356619 to 63356756 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 177
Gm11606 1 63357434 to 63358050 616 - pseudogene predicted gene 11606
Gm11605 1 63364720 to 63365365 645 - pseudogene predicted gene 11605
Gm35393 1 63431305 to 63436457 5152 - lncRNA gene predicted gene, 35393
Tssr11891 1 63442243 to 63442257 14 - TSS region transcription start site region 11891
Tssr7067 1 63442494 to 63442499 5 + TSS region transcription start site region 7067
Cpgi318 1 63445272 to 63446854 1582 CpG island CpG island 318
Tssr7068 1 63445715 to 63445765 50 + TSS region transcription start site region 7068
Tssr7069 1 63445842 to 63445943 101 + TSS region transcription start site region 7069
Adam23 1 63445882 to 63596104 150222 + protein coding gene a disintegrin and metallopeptidase domain 23
Tssr7070 1 63445948 to 63445980 32 + TSS region transcription start site region 7070
Tssr7071 1 63446006 to 63446020 14 + TSS region transcription start site region 7071
Tssr7072 1 63446085 to 63446090 5 + TSS region transcription start site region 7072
Tssr7073 1 63446175 to 63446185 10 + TSS region transcription start site region 7073
Abbp1 1 120601949 to 62907596 -57694353 QTL A/J and C57BL/6 blood pressure 1