Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:61041468-62661475

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr6970 1 61075637 to 61075639 2 + TSS region transcription start site region 6970
Rpl17-ps1 1 61075674 to 61076225 551 + pseudogene ribosomal protein L17, pseudogene 1
Gm11590 1 61121378 to 61124004 2626 - pseudogene predicted gene 11590
D1Mit301 1 61137376 to 61137475 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 301
Gm11591 1 61196541 to 61197242 701 - pseudogene predicted gene 11591
Cpgi307 1 61203217 to 61203381 164 CpG island CpG island 307
D1Mit176 1 61257330 to 61257440 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 176
Gm28083 1 61265291 to 61271514 6223 - lincRNA gene predicted gene 28083
Gm11587 1 61301909 to 61307746 5837 + lincRNA gene predicted gene 11587
9530026F06Rik 1 61378432 to 61395904 17472 + lincRNA gene RIKEN cDNA 9530026F06 gene
Gm11588 1 61440101 to 61469475 29374 + lincRNA gene predicted gene 11588
Gm25839 1 61470441 to 61470543 102 + snRNA gene predicted gene, 25839
Gm28449 1 61474951 to 61476028 1077 + lincRNA gene predicted gene 28449
Gm36943 1 61545882 to 61546163 281 + unclassified gene predicted gene, 36943
Gm28094 1 61548122 to 61548511 389 + pseudogene predicted gene 28094
4930587A21Rik 1 61616943 to 61621149 4206 - lincRNA gene RIKEN cDNA 4930587A21 gene
Cpgi308 1 61638605 to 61639659 1054 CpG island CpG island 308
Tssr6971 1 61638819 to 61638841 22 + TSS region transcription start site region 6971
Pard3b 1 61638824 to 62642284 1003460 + protein coding gene par-3 family cell polarity regulator beta
Tssr6972 1 61638869 to 61638891 22 + TSS region transcription start site region 6972
Tssr95 1 61638912 to 61638923 11 + TSS region transcription start site region 95
Tssr6973 1 61638942 to 61638955 13 + TSS region transcription start site region 6973
Tssr6974 1 61638993 to 61639013 20 + TSS region transcription start site region 6974
Gm37205 1 61654423 to 61657158 2735 + unclassified gene predicted gene, 37205
Tssr6975 1 61662271 to 61662272 1 + TSS region transcription start site region 6975
Gm38012 1 61677249 to 61680277 3028 + unclassified gene predicted gene, 38012
Gm38278 1 61702527 to 61703891 1364 + unclassified gene predicted gene, 38278
Pard3bos1 1 61767415 to 61851540 84125 - antisense lncRNA gene par-3 family cell polarity regulator beta, opposite strand 1
Gm38075 1 61805221 to 61806140 919 + unclassified gene predicted gene, 38075
D1Mit326 1 61808019 to 61808145 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 326
Tssr6976 1 61814098 to 61814102 4 + TSS region transcription start site region 6976
Tssr11869 1 61851468 to 61851475 7 - TSS region transcription start site region 11869
Tssr11870 1 61851484 to 61851497 13 - TSS region transcription start site region 11870
Tssr6977 1 61874286 to 61874290 4 + TSS region transcription start site region 6977
Tssr6978 1 61880329 to 61880333 4 + TSS region transcription start site region 6978
Gm29640 1 61980930 to 61981207 277 - pseudogene predicted gene 29640
Gm29641 1 62095081 to 62095339 258 - pseudogene predicted gene 29641
Pard3bos2 1 62131195 to 62136109 4914 - antisense lncRNA gene par-3 family cell polarity regulator beta, opposite strand 2
Gm38351 1 62247153 to 62249670 2517 + unclassified gene predicted gene, 38351
Pard3bos3 1 62456725 to 62499261 42536 - antisense lncRNA gene par-3 family cell polarity regulator beta, opposite strand 3
Tssr6979 1 62483394 to 62483410 16 + TSS region transcription start site region 6979
Gm34881 1 62513330 to 62526071 12741 - lncRNA gene predicted gene, 34881
Tssr6980 1 62522635 to 62522640 5 + TSS region transcription start site region 6980
Gm29084 1 62534491 to 62535942 1451 - antisense lncRNA gene predicted gene 29084
Gm11600 1 62656695 to 62657788 1093 - pseudogene predicted gene 11600
Tssr6981 1 62660813 to 62660814 1 + TSS region transcription start site region 6981
Gm11599 1 62660839 to 62661716 877 + pseudogene predicted gene 11599