Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:60795291-61741514

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2310016D23Rik 1 60778843 to 60803790 24947 + lincRNA gene RIKEN cDNA 2310016D23 gene
Tssr6946 1 60807932 to 60807948 16 + TSS region transcription start site region 6946
Gm11581 1 60809116 to 60809942 826 + pseudogene predicted gene 11581
Tssr6947 1 60811510 to 60811512 2 + TSS region transcription start site region 6947
Tssr6948 1 60812229 to 60812241 12 + TSS region transcription start site region 6948
D1Mit249 1 60840267 to 60840414 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 249
Gm38137 1 60880338 to 60881738 1400 + lncRNA gene predicted gene, 38137
Gm39650 1 60887089 to 60887534 445 + lncRNA gene predicted gene, 39650
Tssr11861 1 60887094 to 60887109 15 - TSS region transcription start site region 11861
Tssr6949 1 60887312 to 60887322 10 + TSS region transcription start site region 6949
Tssr6950 1 60887361 to 60887386 25 + TSS region transcription start site region 6950
Tssr6951 1 60893536 to 60893551 15 + TSS region transcription start site region 6951
Tssr11862 1 60898636 to 60898673 37 - TSS region transcription start site region 11862
Tssr6952 1 60900860 to 60900861 1 + TSS region transcription start site region 6952
Rpl18-ps1 1 60900898 to 60901422 524 + pseudogene ribosomal protein L18, pseudogene 1
Tssr11863 1 60902534 to 60902538 4 - TSS region transcription start site region 11863
Tssr6953 1 60903422 to 60903430 8 + TSS region transcription start site region 6953
Tssr11864 1 60908875 to 60908879 4 - TSS region transcription start site region 11864
Tssr6954 1 60908993 to 60909033 40 + TSS region transcription start site region 6954
Ctla4 1 60909025 to 60915832 6807 + protein coding gene cytotoxic T-lymphocyte-associated protein 4
Tssr6955 1 60909085 to 60909102 17 + TSS region transcription start site region 6955
Tssr6956 1 60909148 to 60909159 11 + TSS region transcription start site region 6956
Tssr6957 1 60909223 to 60909266 43 + TSS region transcription start site region 6957
Tssr6958 1 60909350 to 60909356 6 + TSS region transcription start site region 6958
Tssr11865 1 60910721 to 60910746 25 - TSS region transcription start site region 11865
Tssr11866 1 60910917 to 60910961 44 - TSS region transcription start site region 11866
Tssr6959 1 60911067 to 60911072 5 + TSS region transcription start site region 6959
Tssr6960 1 60911081 to 60911094 13 + TSS region transcription start site region 6960
Tssr6961 1 60911112 to 60911122 10 + TSS region transcription start site region 6961
Tssr6962 1 60911925 to 60911932 7 + TSS region transcription start site region 6962
Tssr11867 1 60913335 to 60913348 13 - TSS region transcription start site region 11867
Tssr6963 1 60913666 to 60913672 6 + TSS region transcription start site region 6963
Tssr6964 1 60913920 to 60913934 14 + TSS region transcription start site region 6964
Tssr6965 1 60914624 to 60914660 36 + TSS region transcription start site region 6965
Cpgi306 1 60921162 to 60921343 181 CpG island CpG island 306
Tssr6966 1 60921226 to 60921242 16 + TSS region transcription start site region 6966
Gm34649 1 60921232 to 60945017 23785 + lncRNA gene predicted gene, 34649
Gm11582 1 60948230 to 60948465 235 - pseudogene predicted gene 11582
Tssr11868 1 60974372 to 60974397 25 - TSS region transcription start site region 11868
Tssr6967 1 60977898 to 60977937 39 + TSS region transcription start site region 6967
Icos 1 60977927 to 61000320 22393 + protein coding gene inducible T cell co-stimulator
Tssr6968 1 60977940 to 60977957 17 + TSS region transcription start site region 6968
Gm37039 1 60989479 to 60991963 2484 + unclassified gene predicted gene, 37039
Tssr6969 1 60998187 to 60998192 5 + TSS region transcription start site region 6969
Tssr6970 1 61075637 to 61075639 2 + TSS region transcription start site region 6970
Rpl17-ps1 1 61075674 to 61076225 551 + pseudogene ribosomal protein L17, pseudogene 1
Gm11590 1 61121378 to 61124004 2626 - pseudogene predicted gene 11590
D1Mit301 1 61137376 to 61137475 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 301
Gm11591 1 61196541 to 61197242 701 - pseudogene predicted gene 11591
Cpgi307 1 61203217 to 61203381 164 CpG island CpG island 307
D1Mit176 1 61257330 to 61257440 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 176
Gm28083 1 61265291 to 61271514 6223 - lincRNA gene predicted gene 28083
Gm11587 1 61301909 to 61307746 5837 + lincRNA gene predicted gene 11587
9530026F06Rik 1 61378432 to 61395904 17472 + lincRNA gene RIKEN cDNA 9530026F06 gene
Gm11588 1 61440101 to 61469475 29374 + lincRNA gene predicted gene 11588
Gm25839 1 61470441 to 61470543 102 + snRNA gene predicted gene, 25839
Gm28449 1 61474951 to 61476028 1077 + lincRNA gene predicted gene 28449
Gm36943 1 61545882 to 61546163 281 + unclassified gene predicted gene, 36943
Gm28094 1 61548122 to 61548511 389 + pseudogene predicted gene 28094
4930587A21Rik 1 61616943 to 61621149 4206 - lincRNA gene RIKEN cDNA 4930587A21 gene
Cpgi308 1 61638605 to 61639659 1054 CpG island CpG island 308
Tssr6971 1 61638819 to 61638841 22 + TSS region transcription start site region 6971
Pard3b 1 61638824 to 62642284 1003460 + protein coding gene par-3 family cell polarity regulator beta
Tssr6972 1 61638869 to 61638891 22 + TSS region transcription start site region 6972
Tssr95 1 61638912 to 61638923 11 + TSS region transcription start site region 95
Tssr6973 1 61638942 to 61638955 13 + TSS region transcription start site region 6973
Tssr6974 1 61638993 to 61639013 20 + TSS region transcription start site region 6974
Gm37205 1 61654423 to 61657158 2735 + unclassified gene predicted gene, 37205
Tssr6975 1 61662271 to 61662272 1 + TSS region transcription start site region 6975
Gm38012 1 61677249 to 61680277 3028 + unclassified gene predicted gene, 38012
Gm38278 1 61702527 to 61703891 1364 + unclassified gene predicted gene, 38278