Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:60709116-60909942

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr6937 1 60714053 to 60714057 4 + TSS region transcription start site region 6937
Tssr6938 1 60746367 to 60746427 60 + TSS region transcription start site region 6938
Cd28 1 60746388 to 60773359 26971 + protein coding gene CD28 antigen
Tssr6939 1 60746429 to 60746477 48 + TSS region transcription start site region 6939
Tssr6940 1 60746485 to 60746496 11 + TSS region transcription start site region 6940
Tssr6941 1 60751716 to 60751719 3 + TSS region transcription start site region 6941
Tssr6942 1 60755475 to 60755479 4 + TSS region transcription start site region 6942
Cpgi305 1 60763087 to 60763289 202 CpG island CpG island 305
Tssr6943 1 60768208 to 60768212 4 + TSS region transcription start site region 6943
Tssr6944 1 60771613 to 60771616 3 + TSS region transcription start site region 6944
Gm11579 1 60776665 to 60781834 5169 - lincRNA gene predicted gene 11579
Tssr6945 1 60778743 to 60778748 5 + TSS region transcription start site region 6945
2310016D23Rik 1 60778843 to 60803790 24947 + lincRNA gene RIKEN cDNA 2310016D23 gene
Gm37198 1 60779352 to 60781461 2109 + unclassified gene predicted gene, 37198
Tssr11859 1 60781686 to 60781735 49 - TSS region transcription start site region 11859
Tssr11860 1 60786449 to 60786452 3 - TSS region transcription start site region 11860
Gm11609 1 60792505 to 60793093 588 + pseudogene predicted gene 11609
Tssr6946 1 60807932 to 60807948 16 + TSS region transcription start site region 6946
Gm11581 1 60809116 to 60809942 826 + pseudogene predicted gene 11581
Tssr6947 1 60811510 to 60811512 2 + TSS region transcription start site region 6947
Tssr6948 1 60812229 to 60812241 12 + TSS region transcription start site region 6948
D1Mit249 1 60840267 to 60840414 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 249
Gm38137 1 60880338 to 60881738 1400 + lncRNA gene predicted gene, 38137
Gm39650 1 60887089 to 60887534 445 + lncRNA gene predicted gene, 39650
Tssr11861 1 60887094 to 60887109 15 - TSS region transcription start site region 11861
Tssr6949 1 60887312 to 60887322 10 + TSS region transcription start site region 6949
Tssr6950 1 60887361 to 60887386 25 + TSS region transcription start site region 6950
Tssr6951 1 60893536 to 60893551 15 + TSS region transcription start site region 6951
Tssr11862 1 60898636 to 60898673 37 - TSS region transcription start site region 11862
Tssr6952 1 60900860 to 60900861 1 + TSS region transcription start site region 6952
Rpl18-ps1 1 60900898 to 60901422 524 + pseudogene ribosomal protein L18, pseudogene 1
Tssr11863 1 60902534 to 60902538 4 - TSS region transcription start site region 11863
Tssr6953 1 60903422 to 60903430 8 + TSS region transcription start site region 6953
Tssr11864 1 60908875 to 60908879 4 - TSS region transcription start site region 11864
Tssr6954 1 60908993 to 60909033 40 + TSS region transcription start site region 6954
Ctla4 1 60909025 to 60915832 6807 + protein coding gene cytotoxic T-lymphocyte-associated protein 4
Tssr6955 1 60909085 to 60909102 17 + TSS region transcription start site region 6955
Tssr6956 1 60909148 to 60909159 11 + TSS region transcription start site region 6956
Tssr6957 1 60909223 to 60909266 43 + TSS region transcription start site region 6957
Tssr6958 1 60909350 to 60909356 6 + TSS region transcription start site region 6958