Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:60500674-61651225

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Raph1 1 60482292 to 60567104 84812 - protein coding gene Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Tssr11854 1 60504792 to 60504801 9 - TSS region transcription start site region 11854
Tssr11855 1 60517153 to 60517158 5 - TSS region transcription start site region 11855
C730045O03Rik 1 60520813 to 60522290 1477 unclassified gene RIKEN cDNA C730045O03 gene
Gm11575 1 60522839 to 60523066 227 - pseudogene predicted gene 11575
D1Mit479 1 60527184 to 60527286 102 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 479
Gm11576 1 60537020 to 60537436 416 + pseudogene predicted gene 11576
Cpgi304 1 60566001 to 60567526 1525 CpG island CpG island 304
Tssr11856 1 60566708 to 60566756 48 - TSS region transcription start site region 11856
Tssr11857 1 60566810 to 60566836 26 - TSS region transcription start site region 11857
Tssr11858 1 60567077 to 60567111 34 - TSS region transcription start site region 11858
Gm11578 1 60592251 to 60592709 458 - pseudogene predicted gene 11578
Gm38388 1 60594807 to 60596236 1429 - lncRNA gene predicted gene, 38388
Tssr6929 1 60596658 to 60596661 3 + TSS region transcription start site region 6929
Tssr6930 1 60609201 to 60609218 17 + TSS region transcription start site region 6930
Tssr6931 1 60609222 to 60609229 7 + TSS region transcription start site region 6931
Gm23762 1 60613698 to 60613803 105 - miRNA gene predicted gene, 23762
Gm11577 1 60700872 to 60701937 1065 + pseudogene predicted gene 11577
D1Mit126 1 60703618 to 60703734 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 126
Tssr6932 1 60703913 to 60703920 7 + TSS region transcription start site region 6932
Eif4a-ps4 1 60703932 to 60705149 1217 + pseudogene eukaryotic translation initiation factor 4A, pseudogene 4
Tssr6933 1 60703975 to 60704014 39 + TSS region transcription start site region 6933
Tssr6934 1 60704985 to 60705000 15 + TSS region transcription start site region 6934
Tssr6935 1 60705231 to 60705249 18 + TSS region transcription start site region 6935
Tssr6936 1 60705287 to 60705295 8 + TSS region transcription start site region 6936
Tssr6937 1 60714053 to 60714057 4 + TSS region transcription start site region 6937
Tssr6938 1 60746367 to 60746427 60 + TSS region transcription start site region 6938
Cd28 1 60746388 to 60773359 26971 + protein coding gene CD28 antigen
Tssr6939 1 60746429 to 60746477 48 + TSS region transcription start site region 6939
Tssr6940 1 60746485 to 60746496 11 + TSS region transcription start site region 6940
Tssr6941 1 60751716 to 60751719 3 + TSS region transcription start site region 6941
Tssr6942 1 60755475 to 60755479 4 + TSS region transcription start site region 6942
Cpgi305 1 60763087 to 60763289 202 CpG island CpG island 305
Tssr6943 1 60768208 to 60768212 4 + TSS region transcription start site region 6943
Tssr6944 1 60771613 to 60771616 3 + TSS region transcription start site region 6944
Gm11579 1 60776665 to 60781834 5169 - lincRNA gene predicted gene 11579
Tssr6945 1 60778743 to 60778748 5 + TSS region transcription start site region 6945
2310016D23Rik 1 60778843 to 60803790 24947 + lincRNA gene RIKEN cDNA 2310016D23 gene
Gm37198 1 60779352 to 60781461 2109 + unclassified gene predicted gene, 37198
Tssr11859 1 60781686 to 60781735 49 - TSS region transcription start site region 11859
Tssr11860 1 60786449 to 60786452 3 - TSS region transcription start site region 11860
Gm11609 1 60792505 to 60793093 588 + pseudogene predicted gene 11609
Tssr6946 1 60807932 to 60807948 16 + TSS region transcription start site region 6946
Gm11581 1 60809116 to 60809942 826 + pseudogene predicted gene 11581
Tssr6947 1 60811510 to 60811512 2 + TSS region transcription start site region 6947
Tssr6948 1 60812229 to 60812241 12 + TSS region transcription start site region 6948
D1Mit249 1 60840267 to 60840414 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 249
Gm38137 1 60880338 to 60881738 1400 + lncRNA gene predicted gene, 38137
Gm39650 1 60887089 to 60887534 445 + lncRNA gene predicted gene, 39650
Tssr11861 1 60887094 to 60887109 15 - TSS region transcription start site region 11861
Tssr6949 1 60887312 to 60887322 10 + TSS region transcription start site region 6949
Tssr6950 1 60887361 to 60887386 25 + TSS region transcription start site region 6950
Tssr6951 1 60893536 to 60893551 15 + TSS region transcription start site region 6951
Tssr11862 1 60898636 to 60898673 37 - TSS region transcription start site region 11862
Tssr6952 1 60900860 to 60900861 1 + TSS region transcription start site region 6952
Rpl18-ps1 1 60900898 to 60901422 524 + pseudogene ribosomal protein L18, pseudogene 1
Tssr11863 1 60902534 to 60902538 4 - TSS region transcription start site region 11863
Tssr6953 1 60903422 to 60903430 8 + TSS region transcription start site region 6953
Tssr11864 1 60908875 to 60908879 4 - TSS region transcription start site region 11864
Tssr6954 1 60908993 to 60909033 40 + TSS region transcription start site region 6954
Ctla4 1 60909025 to 60915832 6807 + protein coding gene cytotoxic T-lymphocyte-associated protein 4
Tssr6955 1 60909085 to 60909102 17 + TSS region transcription start site region 6955
Tssr6956 1 60909148 to 60909159 11 + TSS region transcription start site region 6956
Tssr6957 1 60909223 to 60909266 43 + TSS region transcription start site region 6957
Tssr6958 1 60909350 to 60909356 6 + TSS region transcription start site region 6958
Tssr11865 1 60910721 to 60910746 25 - TSS region transcription start site region 11865
Tssr11866 1 60910917 to 60910961 44 - TSS region transcription start site region 11866
Tssr6959 1 60911067 to 60911072 5 + TSS region transcription start site region 6959
Tssr6960 1 60911081 to 60911094 13 + TSS region transcription start site region 6960
Tssr6961 1 60911112 to 60911122 10 + TSS region transcription start site region 6961
Tssr6962 1 60911925 to 60911932 7 + TSS region transcription start site region 6962
Tssr11867 1 60913335 to 60913348 13 - TSS region transcription start site region 11867
Tssr6963 1 60913666 to 60913672 6 + TSS region transcription start site region 6963
Tssr6964 1 60913920 to 60913934 14 + TSS region transcription start site region 6964
Tssr6965 1 60914624 to 60914660 36 + TSS region transcription start site region 6965
Cpgi306 1 60921162 to 60921343 181 CpG island CpG island 306
Tssr6966 1 60921226 to 60921242 16 + TSS region transcription start site region 6966
Gm34649 1 60921232 to 60945017 23785 + lncRNA gene predicted gene, 34649
Gm11582 1 60948230 to 60948465 235 - pseudogene predicted gene 11582
Tssr11868 1 60974372 to 60974397 25 - TSS region transcription start site region 11868
Tssr6967 1 60977898 to 60977937 39 + TSS region transcription start site region 6967
Icos 1 60977927 to 61000320 22393 + protein coding gene inducible T cell co-stimulator
Tssr6968 1 60977940 to 60977957 17 + TSS region transcription start site region 6968
Gm37039 1 60989479 to 60991963 2484 + unclassified gene predicted gene, 37039
Tssr6969 1 60998187 to 60998192 5 + TSS region transcription start site region 6969
Tssr6970 1 61075637 to 61075639 2 + TSS region transcription start site region 6970
Rpl17-ps1 1 61075674 to 61076225 551 + pseudogene ribosomal protein L17, pseudogene 1
Gm11590 1 61121378 to 61124004 2626 - pseudogene predicted gene 11590
D1Mit301 1 61137376 to 61137475 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 301
Gm11591 1 61196541 to 61197242 701 - pseudogene predicted gene 11591
Cpgi307 1 61203217 to 61203381 164 CpG island CpG island 307
D1Mit176 1 61257330 to 61257440 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 176
Gm28083 1 61265291 to 61271514 6223 - lincRNA gene predicted gene 28083
Gm11587 1 61301909 to 61307746 5837 + lincRNA gene predicted gene 11587
9530026F06Rik 1 61378432 to 61395904 17472 + lincRNA gene RIKEN cDNA 9530026F06 gene
Gm11588 1 61440101 to 61469475 29374 + lincRNA gene predicted gene 11588
Gm25839 1 61470441 to 61470543 102 + snRNA gene predicted gene, 25839
Gm28449 1 61474951 to 61476028 1077 + lincRNA gene predicted gene 28449
Gm36943 1 61545882 to 61546163 281 + unclassified gene predicted gene, 36943
Gm28094 1 61548122 to 61548511 389 + pseudogene predicted gene 28094
4930587A21Rik 1 61616943 to 61621149 4206 - lincRNA gene RIKEN cDNA 4930587A21 gene
Cpgi308 1 61638605 to 61639659 1054 CpG island CpG island 308
Tssr6971 1 61638819 to 61638841 22 + TSS region transcription start site region 6971
Pard3b 1 61638824 to 62642284 1003460 + protein coding gene par-3 family cell polarity regulator beta
Tssr6972 1 61638869 to 61638891 22 + TSS region transcription start site region 6972
Tssr95 1 61638912 to 61638923 11 + TSS region transcription start site region 95
Tssr6973 1 61638942 to 61638955 13 + TSS region transcription start site region 6973
Tssr6974 1 61638993 to 61639013 20 + TSS region transcription start site region 6974