Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:59998366-60688385

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ica1l 1 59989068 to 60043512 54444 - protein coding gene islet cell autoantigen 1-like
Cpgi298 1 60042472 to 60043649 1177 CpG island CpG island 298
Tssr11842 1 60042931 to 60042975 44 - TSS region transcription start site region 11842
Tssr11843 1 60043092 to 60043175 83 - TSS region transcription start site region 11843
D1Wsu158e 1 60074991 to 60075177 186 DNA segment DNA segment, Chr 1, Wayne State University 158, expressed
Wdr12 1 60076868 to 60098500 21632 - protein coding gene WD repeat domain 12
Cpgi299 1 60097579 to 60097775 196 CpG island CpG island 299
Tssr11844 1 60097612 to 60097702 90 - TSS region transcription start site region 11844
Tssr11845 1 60097893 to 60097924 31 - TSS region transcription start site region 11845
Cpgi300 1 60098069 to 60098829 760 CpG island CpG island 300
Tssr11846 1 60098104 to 60098118 14 - TSS region transcription start site region 11846
Tssr11847 1 60098140 to 60098151 11 - TSS region transcription start site region 11847
Tssr11848 1 60098167 to 60098187 20 - TSS region transcription start site region 11848
Tssr11849 1 60098188 to 60098199 11 - TSS region transcription start site region 11849
Carf 1 60098247 to 60153953 55706 + protein coding gene calcium response factor
Tssr6917 1 60098254 to 60098290 36 + TSS region transcription start site region 6917
Tssr6918 1 60117229 to 60117240 11 + TSS region transcription start site region 6918
Gm15464 1 60117255 to 60117685 430 + pseudogene predicted gene 15464
Cpgi301 1 60180136 to 60181187 1051 CpG island CpG island 301
Tssr11850 1 60180357 to 60180368 11 - TSS region transcription start site region 11850
Tssr6919 1 60180565 to 60180618 53 + TSS region transcription start site region 6919
Nbeal1 1 60180599 to 60338328 157729 + protein coding gene neurobeachin like 1
Tssr6920 1 60181581 to 60181591 10 + TSS region transcription start site region 6920
Tssr6921 1 60231340 to 60231343 3 + TSS region transcription start site region 6921
Gm29332 1 60267402 to 60267628 226 - pseudogene predicted gene 29332
Cpgi302 1 60342933 to 60343833 900 CpG island CpG island 302
Tssr6922 1 60343297 to 60343362 65 + TSS region transcription start site region 6922
Cyp20a1 1 60343323 to 60388060 44737 + protein coding gene cytochrome P450, family 20, subfamily a, polypeptide 1
Tssr6923 1 60343366 to 60343385 19 + TSS region transcription start site region 6923
6030460B20Rik 1 60353119 to 60354176 1057 + unclassified gene RIKEN cDNA 6030460B20 gene
Cpgi303 1 60408994 to 60410355 1361 CpG island CpG island 303
Tssr6924 1 60409544 to 60409600 56 + TSS region transcription start site region 6924
Tssr6925 1 60409612 to 60409648 36 + TSS region transcription start site region 6925
Abi2 1 60409619 to 60481158 71539 + protein coding gene abl-interactor 2
Tssr6926 1 60409660 to 60409754 94 + TSS region transcription start site region 6926
Tssr6927 1 60409773 to 60409802 29 + TSS region transcription start site region 6927
Raph1 1 60482292 to 60567104 84812 - protein coding gene Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Tssr11851 1 60486618 to 60486652 34 - TSS region transcription start site region 11851
Tssr11852 1 60489818 to 60489835 17 - TSS region transcription start site region 11852
Tssr6928 1 60490201 to 60490220 19 + TSS region transcription start site region 6928
Tssr11853 1 60498508 to 60498529 21 - TSS region transcription start site region 11853
Tssr11854 1 60504792 to 60504801 9 - TSS region transcription start site region 11854
Tssr11855 1 60517153 to 60517158 5 - TSS region transcription start site region 11855
C730045O03Rik 1 60520813 to 60522290 1477 unclassified gene RIKEN cDNA C730045O03 gene
Gm11575 1 60522839 to 60523066 227 - pseudogene predicted gene 11575
D1Mit479 1 60527184 to 60527286 102 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 479
Gm11576 1 60537020 to 60537436 416 + pseudogene predicted gene 11576
Cpgi304 1 60566001 to 60567526 1525 CpG island CpG island 304
Tssr11856 1 60566708 to 60566756 48 - TSS region transcription start site region 11856
Tssr11857 1 60566810 to 60566836 26 - TSS region transcription start site region 11857
Tssr11858 1 60567077 to 60567111 34 - TSS region transcription start site region 11858
Gm11578 1 60592251 to 60592709 458 - pseudogene predicted gene 11578
Gm38388 1 60594807 to 60596236 1429 - lncRNA gene predicted gene, 38388
Tssr6929 1 60596658 to 60596661 3 + TSS region transcription start site region 6929
Tssr6930 1 60609201 to 60609218 17 + TSS region transcription start site region 6930
Tssr6931 1 60609222 to 60609229 7 + TSS region transcription start site region 6931
Gm23762 1 60613698 to 60613803 105 - miRNA gene predicted gene, 23762