Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:59697972-60128027

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nop58 1 59684951 to 59711510 26559 + protein coding gene NOP58 ribonucleoprotein
Tssr6887 1 59698060 to 59698075 15 + TSS region transcription start site region 6887
Gm26287 1 59704258 to 59704338 80 + snoRNA gene predicted gene, 26287
Snord11 1 59704808 to 59704870 62 + snoRNA gene small nucleolar RNA, C/D box 11
Tssr6888 1 59705642 to 59705655 13 + TSS region transcription start site region 6888
Tssr6889 1 59705659 to 59705693 34 + TSS region transcription start site region 6889
Tssr6890 1 59706999 to 59707038 39 + TSS region transcription start site region 6890
Tssr6891 1 59709000 to 59709040 40 + TSS region transcription start site region 6891
Tssr6892 1 59710517 to 59710549 32 + TSS region transcription start site region 6892
Tssr11837 1 59710544 to 59710620 76 - TSS region transcription start site region 11837
B430105G09Rik 1 59762208 to 59764250 2042 unclassified gene RIKEN cDNA B430105G09 gene
Cpgi296 1 59762654 to 59764947 2293 CpG island CpG island 296
Tssr11838 1 59763304 to 59763317 13 - TSS region transcription start site region 11838
Tssr11839 1 59763336 to 59763356 20 - TSS region transcription start site region 11839
Tssr6893 1 59763384 to 59763395 11 + TSS region transcription start site region 6893
Tssr6894 1 59763418 to 59763462 44 + TSS region transcription start site region 6894
Tssr6895 1 59763506 to 59763525 19 + TSS region transcription start site region 6895
Tssr6896 1 59763531 to 59763575 44 + TSS region transcription start site region 6896
Tssr6897 1 59763684 to 59763685 1 + TSS region transcription start site region 6897
Tssr6898 1 59763693 to 59763702 9 + TSS region transcription start site region 6898
Tssr6899 1 59763716 to 59763730 14 + TSS region transcription start site region 6899
Tssr6900 1 59763753 to 59763764 11 + TSS region transcription start site region 6900
Tssr6901 1 59763936 to 59763991 55 + TSS region transcription start site region 6901
Tssr6902 1 59764264 to 59764286 22 + TSS region transcription start site region 6902
Bmpr2 1 59764270 to 59878081 113811 + protein coding gene bone morphogenetic protein receptor, type II (serine/threonine kinase)
Tssr6903 1 59764304 to 59764326 22 + TSS region transcription start site region 6903
Tssr11840 1 59764829 to 59764838 9 - TSS region transcription start site region 11840
Gm38125 1 59801263 to 59804700 3437 + unclassified gene predicted gene, 38125
Tssr6904 1 59815977 to 59815981 4 + TSS region transcription start site region 6904
Tssr6905 1 59860375 to 59860383 8 + TSS region transcription start site region 6905
Tssr6906 1 59867345 to 59867391 46 + TSS region transcription start site region 6906
Tssr6907 1 59872583 to 59872595 12 + TSS region transcription start site region 6907
Tssr6908 1 59874760 to 59874763 3 + TSS region transcription start site region 6908
Tssr6909 1 59875096 to 59875120 24 + TSS region transcription start site region 6909
Tssr6910 1 59875196 to 59875209 13 + TSS region transcription start site region 6910
Gm37977 1 59886969 to 59887689 720 - unclassified gene predicted gene, 37977
Vertcling 1 59898872 to 59899008 136 QTL vertical clinging
D1Mit22 1 59898872 to 59899008 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 22
Dbf 1 59898872 to 82966353 23067481 heritable phenotypic marker doublefoot
Cpgi297 1 59912477 to 59914206 1729 CpG island CpG island 297
Tssr6911 1 59912972 to 59913027 55 + TSS region transcription start site region 6911
Fam117b 1 59913006 to 59985346 72340 + protein coding gene family with sequence similarity 117, member B
Tssr6912 1 59913053 to 59913064 11 + TSS region transcription start site region 6912
Tssr6913 1 59913076 to 59913092 16 + TSS region transcription start site region 6913
Tssr6914 1 59913483 to 59913536 53 + TSS region transcription start site region 6914
Gm37531 1 59929688 to 59935102 5414 + unclassified gene predicted gene, 37531
Gm18829 1 59950406 to 59952464 2058 - pseudogene predicted gene, 18829
Tssr6915 1 59959191 to 59959195 4 + TSS region transcription start site region 6915
Tssr6916 1 59977962 to 59977964 2 + TSS region transcription start site region 6916
Ica1l 1 59989068 to 60043512 54444 - protein coding gene islet cell autoantigen 1-like
Tssr11841 1 59990974 to 59990990 16 - TSS region transcription start site region 11841
Cpgi298 1 60042472 to 60043649 1177 CpG island CpG island 298
Tssr11842 1 60042931 to 60042975 44 - TSS region transcription start site region 11842
Tssr11843 1 60043092 to 60043175 83 - TSS region transcription start site region 11843
D1Wsu158e 1 60074991 to 60075177 186 DNA segment DNA segment, Chr 1, Wayne State University 158, expressed
Wdr12 1 60076868 to 60098500 21632 - protein coding gene WD repeat domain 12
Cpgi299 1 60097579 to 60097775 196 CpG island CpG island 299
Tssr11844 1 60097612 to 60097702 90 - TSS region transcription start site region 11844
Tssr11845 1 60097893 to 60097924 31 - TSS region transcription start site region 11845
Cpgi300 1 60098069 to 60098829 760 CpG island CpG island 300
Tssr11846 1 60098104 to 60098118 14 - TSS region transcription start site region 11846
Tssr11847 1 60098140 to 60098151 11 - TSS region transcription start site region 11847
Tssr11848 1 60098167 to 60098187 20 - TSS region transcription start site region 11848
Tssr11849 1 60098188 to 60098199 11 - TSS region transcription start site region 11849
Carf 1 60098247 to 60153953 55706 + protein coding gene calcium response factor
Tssr6917 1 60098254 to 60098290 36 + TSS region transcription start site region 6917
Tssr6918 1 60117229 to 60117240 11 + TSS region transcription start site region 6918
Gm15464 1 60117255 to 60117685 430 + pseudogene predicted gene 15464