Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:59648323-61083060

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sumo1 1 59639434 to 59670834 31400 - protein coding gene small ubiquitin-like modifier 1
9330123L03Rik 1 59643995 to 59651014 7019 unclassified non-coding RNA gene RIKEN cDNA 9330123L03 gene
Tssr11830 1 59662439 to 59662441 2 - TSS region transcription start site region 11830
Tssr11831 1 59668973 to 59668977 4 - TSS region transcription start site region 11831
Cpgi294 1 59670051 to 59671107 1056 CpG island CpG island 294
Tssr11832 1 59670380 to 59670394 14 - TSS region transcription start site region 11832
Tssr11833 1 59670776 to 59670810 34 - TSS region transcription start site region 11833
Tssr11834 1 59670812 to 59670830 18 - TSS region transcription start site region 11834
Tssr6884 1 59670823 to 59670857 34 + TSS region transcription start site region 6884
Gm29596 1 59673241 to 59673625 384 + pseudogene predicted gene 29596
Tssr11835 1 59684802 to 59684831 29 - TSS region transcription start site region 11835
Cpgi295 1 59684871 to 59685384 513 CpG island CpG island 295
Tssr6885 1 59684949 to 59685023 74 + TSS region transcription start site region 6885
Nop58 1 59684951 to 59711510 26559 + protein coding gene NOP58 ribonucleoprotein
Tssr6886 1 59689544 to 59689548 4 + TSS region transcription start site region 6886
Snord70 1 59691958 to 59692010 52 + snoRNA gene small nucleolar RNA, C/D box 70
Gm26293 1 59692509 to 59692592 83 + snoRNA gene predicted gene, 26293
Tssr11836 1 59697745 to 59697779 34 - TSS region transcription start site region 11836
Tssr6887 1 59698060 to 59698075 15 + TSS region transcription start site region 6887
Gm26287 1 59704258 to 59704338 80 + snoRNA gene predicted gene, 26287
Snord11 1 59704808 to 59704870 62 + snoRNA gene small nucleolar RNA, C/D box 11
Tssr6888 1 59705642 to 59705655 13 + TSS region transcription start site region 6888
Tssr6889 1 59705659 to 59705693 34 + TSS region transcription start site region 6889
Tssr6890 1 59706999 to 59707038 39 + TSS region transcription start site region 6890
Tssr6891 1 59709000 to 59709040 40 + TSS region transcription start site region 6891
Tssr6892 1 59710517 to 59710549 32 + TSS region transcription start site region 6892
Tssr11837 1 59710544 to 59710620 76 - TSS region transcription start site region 11837
B430105G09Rik 1 59762208 to 59764250 2042 unclassified gene RIKEN cDNA B430105G09 gene
Cpgi296 1 59762654 to 59764947 2293 CpG island CpG island 296
Tssr11838 1 59763304 to 59763317 13 - TSS region transcription start site region 11838
Tssr11839 1 59763336 to 59763356 20 - TSS region transcription start site region 11839
Tssr6893 1 59763384 to 59763395 11 + TSS region transcription start site region 6893
Tssr6894 1 59763418 to 59763462 44 + TSS region transcription start site region 6894
Tssr6895 1 59763506 to 59763525 19 + TSS region transcription start site region 6895
Tssr6896 1 59763531 to 59763575 44 + TSS region transcription start site region 6896
Tssr6897 1 59763684 to 59763685 1 + TSS region transcription start site region 6897
Tssr6898 1 59763693 to 59763702 9 + TSS region transcription start site region 6898
Tssr6899 1 59763716 to 59763730 14 + TSS region transcription start site region 6899
Tssr6900 1 59763753 to 59763764 11 + TSS region transcription start site region 6900
Tssr6901 1 59763936 to 59763991 55 + TSS region transcription start site region 6901
Tssr6902 1 59764264 to 59764286 22 + TSS region transcription start site region 6902
Bmpr2 1 59764270 to 59878081 113811 + protein coding gene bone morphogenetic protein receptor, type II (serine/threonine kinase)
Tssr6903 1 59764304 to 59764326 22 + TSS region transcription start site region 6903
Tssr11840 1 59764829 to 59764838 9 - TSS region transcription start site region 11840
Gm38125 1 59801263 to 59804700 3437 + unclassified gene predicted gene, 38125
Tssr6904 1 59815977 to 59815981 4 + TSS region transcription start site region 6904
Tssr6905 1 59860375 to 59860383 8 + TSS region transcription start site region 6905
Tssr6906 1 59867345 to 59867391 46 + TSS region transcription start site region 6906
Tssr6907 1 59872583 to 59872595 12 + TSS region transcription start site region 6907
Tssr6908 1 59874760 to 59874763 3 + TSS region transcription start site region 6908
Tssr6909 1 59875096 to 59875120 24 + TSS region transcription start site region 6909
Tssr6910 1 59875196 to 59875209 13 + TSS region transcription start site region 6910
Gm37977 1 59886969 to 59887689 720 - unclassified gene predicted gene, 37977
Vertcling 1 59898872 to 59899008 136 QTL vertical clinging
D1Mit22 1 59898872 to 59899008 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 22
Dbf 1 59898872 to 82966353 23067481 heritable phenotypic marker doublefoot
Cpgi297 1 59912477 to 59914206 1729 CpG island CpG island 297
Tssr6911 1 59912972 to 59913027 55 + TSS region transcription start site region 6911
Fam117b 1 59913006 to 59985346 72340 + protein coding gene family with sequence similarity 117, member B
Tssr6912 1 59913053 to 59913064 11 + TSS region transcription start site region 6912
Tssr6913 1 59913076 to 59913092 16 + TSS region transcription start site region 6913
Tssr6914 1 59913483 to 59913536 53 + TSS region transcription start site region 6914
Gm37531 1 59929688 to 59935102 5414 + unclassified gene predicted gene, 37531
Gm18829 1 59950406 to 59952464 2058 - pseudogene predicted gene, 18829
Tssr6915 1 59959191 to 59959195 4 + TSS region transcription start site region 6915
Tssr6916 1 59977962 to 59977964 2 + TSS region transcription start site region 6916
Ica1l 1 59989068 to 60043512 54444 - protein coding gene islet cell autoantigen 1-like
Tssr11841 1 59990974 to 59990990 16 - TSS region transcription start site region 11841
Cpgi298 1 60042472 to 60043649 1177 CpG island CpG island 298
Tssr11842 1 60042931 to 60042975 44 - TSS region transcription start site region 11842
Tssr11843 1 60043092 to 60043175 83 - TSS region transcription start site region 11843
D1Wsu158e 1 60074991 to 60075177 186 DNA segment DNA segment, Chr 1, Wayne State University 158, expressed
Wdr12 1 60076868 to 60098500 21632 - protein coding gene WD repeat domain 12
Cpgi299 1 60097579 to 60097775 196 CpG island CpG island 299
Tssr11844 1 60097612 to 60097702 90 - TSS region transcription start site region 11844
Tssr11845 1 60097893 to 60097924 31 - TSS region transcription start site region 11845
Cpgi300 1 60098069 to 60098829 760 CpG island CpG island 300
Tssr11846 1 60098104 to 60098118 14 - TSS region transcription start site region 11846
Tssr11847 1 60098140 to 60098151 11 - TSS region transcription start site region 11847
Tssr11848 1 60098167 to 60098187 20 - TSS region transcription start site region 11848
Tssr11849 1 60098188 to 60098199 11 - TSS region transcription start site region 11849
Carf 1 60098247 to 60153953 55706 + protein coding gene calcium response factor
Tssr6917 1 60098254 to 60098290 36 + TSS region transcription start site region 6917
Tssr6918 1 60117229 to 60117240 11 + TSS region transcription start site region 6918
Gm15464 1 60117255 to 60117685 430 + pseudogene predicted gene 15464
Cpgi301 1 60180136 to 60181187 1051 CpG island CpG island 301
Tssr11850 1 60180357 to 60180368 11 - TSS region transcription start site region 11850
Tssr6919 1 60180565 to 60180618 53 + TSS region transcription start site region 6919
Nbeal1 1 60180599 to 60338328 157729 + protein coding gene neurobeachin like 1
Tssr6920 1 60181581 to 60181591 10 + TSS region transcription start site region 6920
Tssr6921 1 60231340 to 60231343 3 + TSS region transcription start site region 6921
Gm29332 1 60267402 to 60267628 226 - pseudogene predicted gene 29332
Cpgi302 1 60342933 to 60343833 900 CpG island CpG island 302
Tssr6922 1 60343297 to 60343362 65 + TSS region transcription start site region 6922
Cyp20a1 1 60343323 to 60388060 44737 + protein coding gene cytochrome P450, family 20, subfamily a, polypeptide 1
Tssr6923 1 60343366 to 60343385 19 + TSS region transcription start site region 6923
6030460B20Rik 1 60353119 to 60354176 1057 + unclassified gene RIKEN cDNA 6030460B20 gene
Cpgi303 1 60408994 to 60410355 1361 CpG island CpG island 303
Tssr6924 1 60409544 to 60409600 56 + TSS region transcription start site region 6924
Tssr6925 1 60409612 to 60409648 36 + TSS region transcription start site region 6925
Abi2 1 60409619 to 60481158 71539 + protein coding gene abl-interactor 2
Tssr6926 1 60409660 to 60409754 94 + TSS region transcription start site region 6926
Tssr6927 1 60409773 to 60409802 29 + TSS region transcription start site region 6927
Raph1 1 60482292 to 60567104 84812 - protein coding gene Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Tssr11851 1 60486618 to 60486652 34 - TSS region transcription start site region 11851
Tssr11852 1 60489818 to 60489835 17 - TSS region transcription start site region 11852
Tssr6928 1 60490201 to 60490220 19 + TSS region transcription start site region 6928
Tssr11853 1 60498508 to 60498529 21 - TSS region transcription start site region 11853
Tssr11854 1 60504792 to 60504801 9 - TSS region transcription start site region 11854
Tssr11855 1 60517153 to 60517158 5 - TSS region transcription start site region 11855
C730045O03Rik 1 60520813 to 60522290 1477 unclassified gene RIKEN cDNA C730045O03 gene
Gm11575 1 60522839 to 60523066 227 - pseudogene predicted gene 11575
D1Mit479 1 60527184 to 60527286 102 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 479
Gm11576 1 60537020 to 60537436 416 + pseudogene predicted gene 11576
Cpgi304 1 60566001 to 60567526 1525 CpG island CpG island 304
Tssr11856 1 60566708 to 60566756 48 - TSS region transcription start site region 11856
Tssr11857 1 60566810 to 60566836 26 - TSS region transcription start site region 11857
Tssr11858 1 60567077 to 60567111 34 - TSS region transcription start site region 11858
Gm11578 1 60592251 to 60592709 458 - pseudogene predicted gene 11578
Gm38388 1 60594807 to 60596236 1429 - lncRNA gene predicted gene, 38388
Tssr6929 1 60596658 to 60596661 3 + TSS region transcription start site region 6929
Tssr6930 1 60609201 to 60609218 17 + TSS region transcription start site region 6930
Tssr6931 1 60609222 to 60609229 7 + TSS region transcription start site region 6931
Gm23762 1 60613698 to 60613803 105 - miRNA gene predicted gene, 23762
Gm11577 1 60700872 to 60701937 1065 + pseudogene predicted gene 11577
D1Mit126 1 60703618 to 60703734 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 126
Tssr6932 1 60703913 to 60703920 7 + TSS region transcription start site region 6932
Eif4a-ps4 1 60703932 to 60705149 1217 + pseudogene eukaryotic translation initiation factor 4A, pseudogene 4
Tssr6933 1 60703975 to 60704014 39 + TSS region transcription start site region 6933
Tssr6934 1 60704985 to 60705000 15 + TSS region transcription start site region 6934
Tssr6935 1 60705231 to 60705249 18 + TSS region transcription start site region 6935
Tssr6936 1 60705287 to 60705295 8 + TSS region transcription start site region 6936
Tssr6937 1 60714053 to 60714057 4 + TSS region transcription start site region 6937
Tssr6938 1 60746367 to 60746427 60 + TSS region transcription start site region 6938
Cd28 1 60746388 to 60773359 26971 + protein coding gene CD28 antigen
Tssr6939 1 60746429 to 60746477 48 + TSS region transcription start site region 6939
Tssr6940 1 60746485 to 60746496 11 + TSS region transcription start site region 6940
Tssr6941 1 60751716 to 60751719 3 + TSS region transcription start site region 6941
Tssr6942 1 60755475 to 60755479 4 + TSS region transcription start site region 6942
Cpgi305 1 60763087 to 60763289 202 CpG island CpG island 305
Tssr6943 1 60768208 to 60768212 4 + TSS region transcription start site region 6943
Tssr6944 1 60771613 to 60771616 3 + TSS region transcription start site region 6944
Gm11579 1 60776665 to 60781834 5169 - lincRNA gene predicted gene 11579
Tssr6945 1 60778743 to 60778748 5 + TSS region transcription start site region 6945
2310016D23Rik 1 60778843 to 60803790 24947 + lincRNA gene RIKEN cDNA 2310016D23 gene
Gm37198 1 60779352 to 60781461 2109 + unclassified gene predicted gene, 37198
Tssr11859 1 60781686 to 60781735 49 - TSS region transcription start site region 11859
Tssr11860 1 60786449 to 60786452 3 - TSS region transcription start site region 11860
Gm11609 1 60792505 to 60793093 588 + pseudogene predicted gene 11609
Tssr6946 1 60807932 to 60807948 16 + TSS region transcription start site region 6946
Gm11581 1 60809116 to 60809942 826 + pseudogene predicted gene 11581
Tssr6947 1 60811510 to 60811512 2 + TSS region transcription start site region 6947
Tssr6948 1 60812229 to 60812241 12 + TSS region transcription start site region 6948
D1Mit249 1 60840267 to 60840414 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 249
Gm38137 1 60880338 to 60881738 1400 + lncRNA gene predicted gene, 38137
Gm39650 1 60887089 to 60887534 445 + lncRNA gene predicted gene, 39650
Tssr11861 1 60887094 to 60887109 15 - TSS region transcription start site region 11861
Tssr6949 1 60887312 to 60887322 10 + TSS region transcription start site region 6949
Tssr6950 1 60887361 to 60887386 25 + TSS region transcription start site region 6950
Tssr6951 1 60893536 to 60893551 15 + TSS region transcription start site region 6951
Tssr11862 1 60898636 to 60898673 37 - TSS region transcription start site region 11862
Tssr6952 1 60900860 to 60900861 1 + TSS region transcription start site region 6952
Rpl18-ps1 1 60900898 to 60901422 524 + pseudogene ribosomal protein L18, pseudogene 1
Tssr11863 1 60902534 to 60902538 4 - TSS region transcription start site region 11863
Tssr6953 1 60903422 to 60903430 8 + TSS region transcription start site region 6953
Tssr11864 1 60908875 to 60908879 4 - TSS region transcription start site region 11864
Tssr6954 1 60908993 to 60909033 40 + TSS region transcription start site region 6954
Ctla4 1 60909025 to 60915832 6807 + protein coding gene cytotoxic T-lymphocyte-associated protein 4
Tssr6955 1 60909085 to 60909102 17 + TSS region transcription start site region 6955
Tssr6956 1 60909148 to 60909159 11 + TSS region transcription start site region 6956
Tssr6957 1 60909223 to 60909266 43 + TSS region transcription start site region 6957
Tssr6958 1 60909350 to 60909356 6 + TSS region transcription start site region 6958
Tssr11865 1 60910721 to 60910746 25 - TSS region transcription start site region 11865
Tssr11866 1 60910917 to 60910961 44 - TSS region transcription start site region 11866
Tssr6959 1 60911067 to 60911072 5 + TSS region transcription start site region 6959
Tssr6960 1 60911081 to 60911094 13 + TSS region transcription start site region 6960
Tssr6961 1 60911112 to 60911122 10 + TSS region transcription start site region 6961
Tssr6962 1 60911925 to 60911932 7 + TSS region transcription start site region 6962
Tssr11867 1 60913335 to 60913348 13 - TSS region transcription start site region 11867
Tssr6963 1 60913666 to 60913672 6 + TSS region transcription start site region 6963
Tssr6964 1 60913920 to 60913934 14 + TSS region transcription start site region 6964
Tssr6965 1 60914624 to 60914660 36 + TSS region transcription start site region 6965
Cpgi306 1 60921162 to 60921343 181 CpG island CpG island 306
Tssr6966 1 60921226 to 60921242 16 + TSS region transcription start site region 6966
Gm34649 1 60921232 to 60945017 23785 + lncRNA gene predicted gene, 34649
Gm11582 1 60948230 to 60948465 235 - pseudogene predicted gene 11582
Tssr11868 1 60974372 to 60974397 25 - TSS region transcription start site region 11868
Tssr6967 1 60977898 to 60977937 39 + TSS region transcription start site region 6967
Icos 1 60977927 to 61000320 22393 + protein coding gene inducible T cell co-stimulator
Tssr6968 1 60977940 to 60977957 17 + TSS region transcription start site region 6968
Gm37039 1 60989479 to 60991963 2484 + unclassified gene predicted gene, 37039
Tssr6969 1 60998187 to 60998192 5 + TSS region transcription start site region 6969
Tssr6970 1 61075637 to 61075639 2 + TSS region transcription start site region 6970
Rpl17-ps1 1 61075674 to 61076225 551 + pseudogene ribosomal protein L17, pseudogene 1