Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:59256400-59706788

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk15 1 59256861 to 59352612 95751 + protein coding gene cyclin-dependent kinase 15
D1Mit279 1 59277790 to 59277962 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 279
Tssr6864 1 59298920 to 59298939 19 + TSS region transcription start site region 6864
Tssr6865 1 59315273 to 59315288 15 + TSS region transcription start site region 6865
Tssr11821 1 59316106 to 59316128 22 - TSS region transcription start site region 11821
Tssr11822 1 59316134 to 59316145 11 - TSS region transcription start site region 11822
Tssr11823 1 59377359 to 59377371 12 - TSS region transcription start site region 11823
Gm29016 1 59378930 to 59392299 13369 + lincRNA gene predicted gene 29016
Gm33724 1 59393246 to 59418927 25681 - lncRNA gene predicted gene, 33724
Tssr6866 1 59432172 to 59432176 4 + TSS region transcription start site region 6866
Gm37737 1 59447865 to 59449502 1637 - unclassified gene predicted gene, 37737
Tssr6867 1 59448851 to 59448856 5 + TSS region transcription start site region 6867
Tssr6868 1 59449274 to 59449281 7 + TSS region transcription start site region 6868
Gm33774 1 59455328 to 59458627 3299 - lncRNA gene predicted gene, 33774
D1Mit302 1 59466834 to 59466973 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 302
Cpgi291 1 59481400 to 59481788 388 CpG island CpG island 291
Cpgi292 1 59481809 to 59484600 2791 CpG island CpG island 292
Tssr6869 1 59482091 to 59482102 11 + TSS region transcription start site region 6869
Tssr6870 1 59482120 to 59482131 11 + TSS region transcription start site region 6870
Tssr6871 1 59482133 to 59482166 33 + TSS region transcription start site region 6871
Fzd7 1 59482424 to 59486955 4531 + protein coding gene frizzled class receptor 7
Tssr6872 1 59482664 to 59482702 38 + TSS region transcription start site region 6872
Tssr6873 1 59482871 to 59482894 23 + TSS region transcription start site region 6873
Tssr6874 1 59482895 to 59482936 41 + TSS region transcription start site region 6874
Tssr6875 1 59482940 to 59482952 12 + TSS region transcription start site region 6875
Gm26813 1 59488480 to 59492605 4125 - lincRNA gene predicted gene, 26813
2310061L18Rik 1 59515795 to 59516630 835 unclassified gene RIKEN cDNA 2310061L18 gene
Cpgi293 1 59516070 to 59516334 264 CpG island CpG island 293
Gm973 1 59516264 to 59636417 120153 + protein coding gene predicted gene 973
Gm39649 1 59532995 to 59537221 4226 - lncRNA gene predicted gene, 39649
1700122D07Rik 1 59534811 to 59537229 2418 - antisense lncRNA gene RIKEN cDNA 1700122D07 gene
Tssr11824 1 59537195 to 59537231 36 - TSS region transcription start site region 11824
Gm28411 1 59542117 to 59548804 6687 - antisense lncRNA gene predicted gene 28411
Tssr6876 1 59544139 to 59544153 14 + TSS region transcription start site region 6876
Tssr6877 1 59544191 to 59544245 54 + TSS region transcription start site region 6877
Tssr11825 1 59548779 to 59548784 5 - TSS region transcription start site region 11825
Tssr11826 1 59548790 to 59548802 12 - TSS region transcription start site region 11826
Tssr6878 1 59548836 to 59548846 10 + TSS region transcription start site region 6878
Tssr6879 1 59548862 to 59548871 9 + TSS region transcription start site region 6879
Tssr94 1 59548874 to 59548880 6 + TSS region transcription start site region 94
Tssr6880 1 59551028 to 59551040 12 + TSS region transcription start site region 6880
Tssr11827 1 59551117 to 59551133 16 - TSS region transcription start site region 11827
Tssr11828 1 59551135 to 59551146 11 - TSS region transcription start site region 11828
Gm39648 1 59582482 to 59596208 13726 - lncRNA gene predicted gene, 39648
Tssr11829 1 59592202 to 59592228 26 - TSS region transcription start site region 11829
Tssr6881 1 59606743 to 59606754 11 + TSS region transcription start site region 6881
Tssr6882 1 59606758 to 59606781 23 + TSS region transcription start site region 6882
Gm33833 1 59612058 to 59619439 7381 - lncRNA gene predicted gene, 33833
Tssr6883 1 59619398 to 59619415 17 + TSS region transcription start site region 6883
Gm24545 1 59626580 to 59626664 84 + unclassified non-coding RNA gene predicted gene, 24545
Sumo1 1 59639434 to 59670834 31400 - protein coding gene small ubiquitin-like modifier 1
9330123L03Rik 1 59643995 to 59651014 7019 unclassified non-coding RNA gene RIKEN cDNA 9330123L03 gene
D430013B06Rik 1 59646200 to 59648071 1871 - unclassified gene RIKEN cDNA D430013B06 gene
Tssr11830 1 59662439 to 59662441 2 - TSS region transcription start site region 11830
Tssr11831 1 59668973 to 59668977 4 - TSS region transcription start site region 11831
Cpgi294 1 59670051 to 59671107 1056 CpG island CpG island 294
Tssr11832 1 59670380 to 59670394 14 - TSS region transcription start site region 11832
Tssr11833 1 59670776 to 59670810 34 - TSS region transcription start site region 11833
Tssr11834 1 59670812 to 59670830 18 - TSS region transcription start site region 11834
Tssr6884 1 59670823 to 59670857 34 + TSS region transcription start site region 6884
Gm29596 1 59673241 to 59673625 384 + pseudogene predicted gene 29596
Tssr11835 1 59684802 to 59684831 29 - TSS region transcription start site region 11835
Cpgi295 1 59684871 to 59685384 513 CpG island CpG island 295
Tssr6885 1 59684949 to 59685023 74 + TSS region transcription start site region 6885
Nop58 1 59684951 to 59711510 26559 + protein coding gene NOP58 ribonucleoprotein
Tssr6886 1 59689544 to 59689548 4 + TSS region transcription start site region 6886
Snord70 1 59691958 to 59692010 52 + snoRNA gene small nucleolar RNA, C/D box 70
Gm26293 1 59692509 to 59692592 83 + snoRNA gene predicted gene, 26293
Tssr11836 1 59697745 to 59697779 34 - TSS region transcription start site region 11836
Tssr6887 1 59698060 to 59698075 15 + TSS region transcription start site region 6887
Gm26287 1 59704258 to 59704338 80 + snoRNA gene predicted gene, 26287
Snord11 1 59704808 to 59704870 62 + snoRNA gene small nucleolar RNA, C/D box 11
Tssr6888 1 59705642 to 59705655 13 + TSS region transcription start site region 6888
Tssr6889 1 59705659 to 59705693 34 + TSS region transcription start site region 6889