Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:59066134-59566145

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25502 1 59070988 to 59071118 130 + snoRNA gene predicted gene, 25502
Tssr11812 1 59084487 to 59084535 48 - TSS region transcription start site region 11812
Cpgi288 1 59094836 to 59095048 212 CpG island CpG island 288
Tssr11813 1 59094885 to 59094903 18 - TSS region transcription start site region 11813
Tssr11814 1 59094914 to 59094920 6 - TSS region transcription start site region 11814
Tmem237 1 59100590 to 59120408 19818 - protein coding gene transmembrane protein 237
Cpgi289 1 59119646 to 59120614 968 CpG island CpG island 289
Tssr11815 1 59119748 to 59119795 47 - TSS region transcription start site region 11815
Tssr6858 1 59119822 to 59119861 39 + TSS region transcription start site region 6858
G730003C15Rik 1 59119833 to 59122141 2308 + antisense lncRNA gene RIKEN cDNA G730003C15 gene
Tssr11816 1 59120079 to 59120135 56 - TSS region transcription start site region 11816
Mpp4 1 59120935 to 59163389 42454 - protein coding gene membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)
Tssr6859 1 59150889 to 59150905 16 + TSS region transcription start site region 6859
Tssr6860 1 59150914 to 59150921 7 + TSS region transcription start site region 6860
Tssr6861 1 59150931 to 59150959 28 + TSS region transcription start site region 6861
Gm29017 1 59151047 to 59169320 18273 + antisense lncRNA gene predicted gene 29017
Tssr11817 1 59151679 to 59151686 7 - TSS region transcription start site region 11817
Gm19125 1 59155607 to 59156957 1350 + pseudogene predicted gene, 19125
Tssr11818 1 59161559 to 59161593 34 - TSS region transcription start site region 11818
Tssr11819 1 59161594 to 59161628 34 - TSS region transcription start site region 11819
Als2 1 59162926 to 59237231 74305 - protein coding gene alsin Rho guanine nucleotide exchange factor
Tssr6862 1 59172086 to 59172113 27 + TSS region transcription start site region 6862
Wbcc1 1 59220508 to 59220508 0 QTL white blood cell count 1
D1Mit161 1 59223201 to 59223312 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 161
Cpgi290 1 59236795 to 59237571 776 CpG island CpG island 290
Tssr11820 1 59237175 to 59237256 81 - TSS region transcription start site region 11820
Gm33667 1 59237378 to 59239022 1644 + lncRNA gene predicted gene, 33667
Tssr6863 1 59237468 to 59237493 25 + TSS region transcription start site region 6863
Cdk15 1 59256861 to 59352612 95751 + protein coding gene cyclin-dependent kinase 15
D1Mit279 1 59277790 to 59277962 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 279
Tssr6864 1 59298920 to 59298939 19 + TSS region transcription start site region 6864
Tssr6865 1 59315273 to 59315288 15 + TSS region transcription start site region 6865
Tssr11821 1 59316106 to 59316128 22 - TSS region transcription start site region 11821
Tssr11822 1 59316134 to 59316145 11 - TSS region transcription start site region 11822
Tssr11823 1 59377359 to 59377371 12 - TSS region transcription start site region 11823
Gm29016 1 59378930 to 59392299 13369 + lincRNA gene predicted gene 29016
Gm33724 1 59393246 to 59418927 25681 - lncRNA gene predicted gene, 33724
Tssr6866 1 59432172 to 59432176 4 + TSS region transcription start site region 6866
Gm37737 1 59447865 to 59449502 1637 - unclassified gene predicted gene, 37737
Tssr6867 1 59448851 to 59448856 5 + TSS region transcription start site region 6867
Tssr6868 1 59449274 to 59449281 7 + TSS region transcription start site region 6868
Gm33774 1 59455328 to 59458627 3299 - lncRNA gene predicted gene, 33774
D1Mit302 1 59466834 to 59466973 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 302
Cpgi291 1 59481400 to 59481788 388 CpG island CpG island 291
Cpgi292 1 59481809 to 59484600 2791 CpG island CpG island 292
Tssr6869 1 59482091 to 59482102 11 + TSS region transcription start site region 6869
Tssr6870 1 59482120 to 59482131 11 + TSS region transcription start site region 6870
Tssr6871 1 59482133 to 59482166 33 + TSS region transcription start site region 6871
Fzd7 1 59482424 to 59486955 4531 + protein coding gene frizzled class receptor 7
Tssr6872 1 59482664 to 59482702 38 + TSS region transcription start site region 6872
Tssr6873 1 59482871 to 59482894 23 + TSS region transcription start site region 6873
Tssr6874 1 59482895 to 59482936 41 + TSS region transcription start site region 6874
Tssr6875 1 59482940 to 59482952 12 + TSS region transcription start site region 6875
Gm26813 1 59488480 to 59492605 4125 - lincRNA gene predicted gene, 26813
2310061L18Rik 1 59515795 to 59516630 835 unclassified gene RIKEN cDNA 2310061L18 gene
Cpgi293 1 59516070 to 59516334 264 CpG island CpG island 293
Gm973 1 59516264 to 59636417 120153 + protein coding gene predicted gene 973
Gm39649 1 59532995 to 59537221 4226 - lncRNA gene predicted gene, 39649
1700122D07Rik 1 59534811 to 59537229 2418 - antisense lncRNA gene RIKEN cDNA 1700122D07 gene
Tssr11824 1 59537195 to 59537231 36 - TSS region transcription start site region 11824
Gm28411 1 59542117 to 59548804 6687 - antisense lncRNA gene predicted gene 28411
Tssr6876 1 59544139 to 59544153 14 + TSS region transcription start site region 6876
Tssr6877 1 59544191 to 59544245 54 + TSS region transcription start site region 6877
Tssr11825 1 59548779 to 59548784 5 - TSS region transcription start site region 11825
Tssr11826 1 59548790 to 59548802 12 - TSS region transcription start site region 11826
Tssr6878 1 59548836 to 59548846 10 + TSS region transcription start site region 6878
Tssr6879 1 59548862 to 59548871 9 + TSS region transcription start site region 6879
Tssr94 1 59548874 to 59548880 6 + TSS region transcription start site region 94
Tssr6880 1 59551028 to 59551040 12 + TSS region transcription start site region 6880
Tssr11827 1 59551117 to 59551133 16 - TSS region transcription start site region 11827
Tssr11828 1 59551135 to 59551146 11 - TSS region transcription start site region 11828