Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:5899574-6529605

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alpq4 1 5906465 to 5906465 0 QTL alcohol preference QTL 4
Npbwr1 1 5913707 to 5917398 3691 - protein coding gene neuropeptides B/W receptor 1
Cpgi15 1 5916286 to 5917516 1230 CpG island CpG island 15
Gm19214 1 6048972 to 6050045 1073 - pseudogene predicted gene, 19214
Gm46206 1 6164706 to 6167315 2609 - lncRNA gene predicted gene, 46206
4732440D04Rik 1 6209866 to 6215293 5427 - antisense lncRNA gene RIKEN cDNA 4732440D04 gene
Cpgi16 1 6214130 to 6215591 1461 CpG island CpG island 16
Tssr10903 1 6214436 to 6214447 11 - TSS region transcription start site region 10903
Tssr10904 1 6214515 to 6214534 19 - TSS region transcription start site region 10904
Tssr10905 1 6214539 to 6214572 33 - TSS region transcription start site region 10905
Tssr10906 1 6214574 to 6214605 31 - TSS region transcription start site region 10906
Tssr5820 1 6214627 to 6214683 56 + TSS region transcription start site region 5820
Rb1cc1 1 6214662 to 6276374 61712 + protein coding gene RB1-inducible coiled-coil 1
Tssr5821 1 6214684 to 6214722 38 + TSS region transcription start site region 5821
Tssr5822 1 6214787 to 6214801 14 + TSS region transcription start site region 5822
Tssr5823 1 6214806 to 6214817 11 + TSS region transcription start site region 5823
Tssr5824 1 6214828 to 6214838 10 + TSS region transcription start site region 5824
Tssr5825 1 6214857 to 6214866 9 + TSS region transcription start site region 5825
Tssr5826 1 6222703 to 6222707 4 + TSS region transcription start site region 5826
Tssr5827 1 6249311 to 6249329 18 + TSS region transcription start site region 5827
Tssr5828 1 6249702 to 6249714 12 + TSS region transcription start site region 5828
Tssr5829 1 6267083 to 6267088 5 + TSS region transcription start site region 5829
Tssr2 1 6324643 to 6324646 3 + TSS region transcription start site region 2
Cpgi17 1 6359030 to 6359537 507 CpG island CpG island 17
Alkal1 1 6359331 to 6394731 35400 + protein coding gene ALK and LTK ligand 1
Gm46083 1 6377512 to 6382119 4607 - lncRNA gene predicted gene, 46083
Tssr5830 1 6380272 to 6380282 10 + TSS region transcription start site region 5830
Gm2147 1 6380394 to 6381032 638 + pseudogene predicted gene 2147
Tssr10907 1 6382543 to 6382545 2 - TSS region transcription start site region 10907
Gm7417 1 6382634 to 6383106 472 - pseudogene predicted gene 7417
Cpgi18 1 6382766 to 6383291 525 CpG island CpG island 18
Tssr10908 1 6383047 to 6383058 11 - TSS region transcription start site region 10908
Gm19026 1 6429658 to 6441296 11638 - pseudogene predicted gene, 19026
Cpgi19 1 6440858 to 6441884 1026 CpG island CpG island 19
Tssr10909 1 6443557 to 6443567 10 - TSS region transcription start site region 10909
Tssr5831 1 6453818 to 6453830 12 + TSS region transcription start site region 5831
Tssr5832 1 6453842 to 6453853 11 + TSS region transcription start site region 5832
Tssr10910 1 6454279 to 6454305 26 - TSS region transcription start site region 10910
Tssr5833 1 6475233 to 6475244 11 + TSS region transcription start site region 5833
Tssr5834 1 6482756 to 6482786 30 + TSS region transcription start site region 5834
St18 1 6487231 to 6860940 373709 + protein coding gene suppression of tumorigenicity 18
Tssr5835 1 6487307 to 6487338 31 + TSS region transcription start site region 5835
Tssr5836 1 6487371 to 6487378 7 + TSS region transcription start site region 5836
Tssr5837 1 6489175 to 6489200 25 + TSS region transcription start site region 5837
Tssr5838 1 6489217 to 6489245 28 + TSS region transcription start site region 5838
Tssr5839 1 6500370 to 6500397 27 + TSS region transcription start site region 5839
Tssr5840 1 6507835 to 6507838 3 + TSS region transcription start site region 5840
Tssr5841 1 6518504 to 6518516 12 + TSS region transcription start site region 5841
Tssr5842 1 6518662 to 6518683 21 + TSS region transcription start site region 5842
Tssr5843 1 6527812 to 6527860 48 + TSS region transcription start site region 5843
Tssr5844 1 6527913 to 6527936 23 + TSS region transcription start site region 5844
Tssr5845 1 6527954 to 6527987 33 + TSS region transcription start site region 5845
Tssr5846 1 6528005 to 6528017 12 + TSS region transcription start site region 5846
Tssr5847 1 6528092 to 6528108 16 + TSS region transcription start site region 5847
Tssr5848 1 6528253 to 6528274 21 + TSS region transcription start site region 5848
Tssr5849 1 6528276 to 6528310 34 + TSS region transcription start site region 5849