Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:58805406-61097464

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312 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Casp8 1 58795374 to 58847503 52129 + protein coding gene caspase 8
D1Mit414 1 58807051 to 58807158 107 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 414
Tssr6847 1 58831585 to 58831632 47 + TSS region transcription start site region 6847
Tssr6848 1 58846803 to 58846818 15 + TSS region transcription start site region 6848
Tssr6849 1 58846870 to 58846888 18 + TSS region transcription start site region 6849
Tssr6850 1 58846914 to 58846935 21 + TSS region transcription start site region 6850
Gm28802 1 58850085 to 58892792 42707 - pseudogene predicted gene 28802
D1Mit75b 1 58891199 to 58891369 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 75b
Trak2 1 58900449 to 58973430 72981 - protein coding gene trafficking protein, kinesin binding 2
Tssr11793 1 58962506 to 58962517 11 - TSS region transcription start site region 11793
Tssr11794 1 58962557 to 58962561 4 - TSS region transcription start site region 11794
Tssr11795 1 58972693 to 58972697 4 - TSS region transcription start site region 11795
Cpgi287 1 58972892 to 58974232 1340 CpG island CpG island 287
Tssr11796 1 58973286 to 58973300 14 - TSS region transcription start site region 11796
Tssr11797 1 58973312 to 58973325 13 - TSS region transcription start site region 11797
Tssr11798 1 58973335 to 58973354 19 - TSS region transcription start site region 11798
Tssr11799 1 58973355 to 58973381 26 - TSS region transcription start site region 11799
Tssr11800 1 58973386 to 58973397 11 - TSS region transcription start site region 11800
Tssr11801 1 58973421 to 58973440 19 - TSS region transcription start site region 11801
Tssr11802 1 58973450 to 58973461 11 - TSS region transcription start site region 11802
Tssr11803 1 58973476 to 58973486 10 - TSS region transcription start site region 11803
Tssr6851 1 58973521 to 58973582 61 + TSS region transcription start site region 6851
Stradb 1 58973527 to 58995126 21599 + protein coding gene STE20-related kinase adaptor beta
Tssr6852 1 58973594 to 58973613 19 + TSS region transcription start site region 6852
Tssr6853 1 58973631 to 58973659 28 + TSS region transcription start site region 6853
Tssr6854 1 58973661 to 58973684 23 + TSS region transcription start site region 6854
Tssr6855 1 58973690 to 58973701 11 + TSS region transcription start site region 6855
Tssr6856 1 58973702 to 58973717 15 + TSS region transcription start site region 6856
Tssr11804 1 58982618 to 58982623 5 - TSS region transcription start site region 11804
C2cd6 1 58997123 to 59003539 6416 - protein coding gene C2 calcium dependent domain containing 6
Tssr11805 1 59003535 to 59003540 5 - TSS region transcription start site region 11805
Tssr11806 1 59014070 to 59014075 5 - TSS region transcription start site region 11806
Tssr11807 1 59014086 to 59014093 7 - TSS region transcription start site region 11807
Tssr11808 1 59014096 to 59014104 8 - TSS region transcription start site region 11808
Tssr11809 1 59014106 to 59014115 9 - TSS region transcription start site region 11809
Tssr11810 1 59014121 to 59014151 30 - TSS region transcription start site region 11810
Tssr6857 1 59014190 to 59014209 19 + TSS region transcription start site region 6857
Gm29018 1 59035934 to 59038188 2254 + antisense lncRNA gene predicted gene 29018
Tssr11811 1 59042564 to 59042569 5 - TSS region transcription start site region 11811
Gm25502 1 59070988 to 59071118 130 + snoRNA gene predicted gene, 25502
Tssr11812 1 59084487 to 59084535 48 - TSS region transcription start site region 11812
Cpgi288 1 59094836 to 59095048 212 CpG island CpG island 288
Tssr11813 1 59094885 to 59094903 18 - TSS region transcription start site region 11813
Tssr11814 1 59094914 to 59094920 6 - TSS region transcription start site region 11814
Tmem237 1 59100590 to 59120408 19818 - protein coding gene transmembrane protein 237
Cpgi289 1 59119646 to 59120614 968 CpG island CpG island 289
Tssr11815 1 59119748 to 59119795 47 - TSS region transcription start site region 11815
Tssr6858 1 59119822 to 59119861 39 + TSS region transcription start site region 6858
G730003C15Rik 1 59119833 to 59122141 2308 + antisense lncRNA gene RIKEN cDNA G730003C15 gene
Tssr11816 1 59120079 to 59120135 56 - TSS region transcription start site region 11816
Mpp4 1 59120935 to 59163389 42454 - protein coding gene membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)
Tssr6859 1 59150889 to 59150905 16 + TSS region transcription start site region 6859
Tssr6860 1 59150914 to 59150921 7 + TSS region transcription start site region 6860
Tssr6861 1 59150931 to 59150959 28 + TSS region transcription start site region 6861
Gm29017 1 59151047 to 59169320 18273 + antisense lncRNA gene predicted gene 29017
Tssr11817 1 59151679 to 59151686 7 - TSS region transcription start site region 11817
Gm19125 1 59155607 to 59156957 1350 + pseudogene predicted gene, 19125
Tssr11818 1 59161559 to 59161593 34 - TSS region transcription start site region 11818
Tssr11819 1 59161594 to 59161628 34 - TSS region transcription start site region 11819
Als2 1 59162926 to 59237231 74305 - protein coding gene alsin Rho guanine nucleotide exchange factor
Tssr6862 1 59172086 to 59172113 27 + TSS region transcription start site region 6862
Wbcc1 1 59220508 to 59220508 0 QTL white blood cell count 1
D1Mit161 1 59223201 to 59223312 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 161
Cpgi290 1 59236795 to 59237571 776 CpG island CpG island 290
Tssr11820 1 59237175 to 59237256 81 - TSS region transcription start site region 11820
Gm33667 1 59237378 to 59239022 1644 + lncRNA gene predicted gene, 33667
Tssr6863 1 59237468 to 59237493 25 + TSS region transcription start site region 6863
Cdk15 1 59256861 to 59352612 95751 + protein coding gene cyclin-dependent kinase 15
D1Mit279 1 59277790 to 59277962 172 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 279
Tssr6864 1 59298920 to 59298939 19 + TSS region transcription start site region 6864
Tssr6865 1 59315273 to 59315288 15 + TSS region transcription start site region 6865
Tssr11821 1 59316106 to 59316128 22 - TSS region transcription start site region 11821
Tssr11822 1 59316134 to 59316145 11 - TSS region transcription start site region 11822
Tssr11823 1 59377359 to 59377371 12 - TSS region transcription start site region 11823
Gm29016 1 59378930 to 59392299 13369 + lincRNA gene predicted gene 29016
Gm33724 1 59393246 to 59418927 25681 - lncRNA gene predicted gene, 33724
Tssr6866 1 59432172 to 59432176 4 + TSS region transcription start site region 6866
Gm37737 1 59447865 to 59449502 1637 - unclassified gene predicted gene, 37737
Tssr6867 1 59448851 to 59448856 5 + TSS region transcription start site region 6867
Tssr6868 1 59449274 to 59449281 7 + TSS region transcription start site region 6868
Gm33774 1 59455328 to 59458627 3299 - lncRNA gene predicted gene, 33774
D1Mit302 1 59466834 to 59466973 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 302
Cpgi291 1 59481400 to 59481788 388 CpG island CpG island 291
Cpgi292 1 59481809 to 59484600 2791 CpG island CpG island 292
Tssr6869 1 59482091 to 59482102 11 + TSS region transcription start site region 6869
Tssr6870 1 59482120 to 59482131 11 + TSS region transcription start site region 6870
Tssr6871 1 59482133 to 59482166 33 + TSS region transcription start site region 6871
Fzd7 1 59482424 to 59486955 4531 + protein coding gene frizzled class receptor 7
Tssr6872 1 59482664 to 59482702 38 + TSS region transcription start site region 6872
Tssr6873 1 59482871 to 59482894 23 + TSS region transcription start site region 6873
Tssr6874 1 59482895 to 59482936 41 + TSS region transcription start site region 6874
Tssr6875 1 59482940 to 59482952 12 + TSS region transcription start site region 6875
Gm26813 1 59488480 to 59492605 4125 - lincRNA gene predicted gene, 26813
2310061L18Rik 1 59515795 to 59516630 835 unclassified gene RIKEN cDNA 2310061L18 gene
Cpgi293 1 59516070 to 59516334 264 CpG island CpG island 293
Gm973 1 59516264 to 59636417 120153 + protein coding gene predicted gene 973
Gm39649 1 59532995 to 59537221 4226 - lncRNA gene predicted gene, 39649
1700122D07Rik 1 59534811 to 59537229 2418 - antisense lncRNA gene RIKEN cDNA 1700122D07 gene
Tssr11824 1 59537195 to 59537231 36 - TSS region transcription start site region 11824
Gm28411 1 59542117 to 59548804 6687 - antisense lncRNA gene predicted gene 28411
Tssr6876 1 59544139 to 59544153 14 + TSS region transcription start site region 6876
Tssr6877 1 59544191 to 59544245 54 + TSS region transcription start site region 6877
Tssr11825 1 59548779 to 59548784 5 - TSS region transcription start site region 11825
Tssr11826 1 59548790 to 59548802 12 - TSS region transcription start site region 11826
Tssr6878 1 59548836 to 59548846 10 + TSS region transcription start site region 6878
Tssr6879 1 59548862 to 59548871 9 + TSS region transcription start site region 6879
Tssr94 1 59548874 to 59548880 6 + TSS region transcription start site region 94
Tssr6880 1 59551028 to 59551040 12 + TSS region transcription start site region 6880
Tssr11827 1 59551117 to 59551133 16 - TSS region transcription start site region 11827
Tssr11828 1 59551135 to 59551146 11 - TSS region transcription start site region 11828
Gm39648 1 59582482 to 59596208 13726 - lncRNA gene predicted gene, 39648
Tssr11829 1 59592202 to 59592228 26 - TSS region transcription start site region 11829
Tssr6881 1 59606743 to 59606754 11 + TSS region transcription start site region 6881
Tssr6882 1 59606758 to 59606781 23 + TSS region transcription start site region 6882
Gm33833 1 59612058 to 59619439 7381 - lncRNA gene predicted gene, 33833
Tssr6883 1 59619398 to 59619415 17 + TSS region transcription start site region 6883
Gm24545 1 59626580 to 59626664 84 + unclassified non-coding RNA gene predicted gene, 24545
Sumo1 1 59639434 to 59670834 31400 - protein coding gene small ubiquitin-like modifier 1
9330123L03Rik 1 59643995 to 59651014 7019 unclassified non-coding RNA gene RIKEN cDNA 9330123L03 gene
D430013B06Rik 1 59646200 to 59648071 1871 - unclassified gene RIKEN cDNA D430013B06 gene
Tssr11830 1 59662439 to 59662441 2 - TSS region transcription start site region 11830
Tssr11831 1 59668973 to 59668977 4 - TSS region transcription start site region 11831
Cpgi294 1 59670051 to 59671107 1056 CpG island CpG island 294
Tssr11832 1 59670380 to 59670394 14 - TSS region transcription start site region 11832
Tssr11833 1 59670776 to 59670810 34 - TSS region transcription start site region 11833
Tssr11834 1 59670812 to 59670830 18 - TSS region transcription start site region 11834
Tssr6884 1 59670823 to 59670857 34 + TSS region transcription start site region 6884
Gm29596 1 59673241 to 59673625 384 + pseudogene predicted gene 29596
Tssr11835 1 59684802 to 59684831 29 - TSS region transcription start site region 11835
Cpgi295 1 59684871 to 59685384 513 CpG island CpG island 295
Tssr6885 1 59684949 to 59685023 74 + TSS region transcription start site region 6885
Nop58 1 59684951 to 59711510 26559 + protein coding gene NOP58 ribonucleoprotein
Tssr6886 1 59689544 to 59689548 4 + TSS region transcription start site region 6886
Snord70 1 59691958 to 59692010 52 + snoRNA gene small nucleolar RNA, C/D box 70
Gm26293 1 59692509 to 59692592 83 + snoRNA gene predicted gene, 26293
Tssr11836 1 59697745 to 59697779 34 - TSS region transcription start site region 11836
Tssr6887 1 59698060 to 59698075 15 + TSS region transcription start site region 6887
Gm26287 1 59704258 to 59704338 80 + snoRNA gene predicted gene, 26287
Snord11 1 59704808 to 59704870 62 + snoRNA gene small nucleolar RNA, C/D box 11
Tssr6888 1 59705642 to 59705655 13 + TSS region transcription start site region 6888
Tssr6889 1 59705659 to 59705693 34 + TSS region transcription start site region 6889
Tssr6890 1 59706999 to 59707038 39 + TSS region transcription start site region 6890
Tssr6891 1 59709000 to 59709040 40 + TSS region transcription start site region 6891
Tssr6892 1 59710517 to 59710549 32 + TSS region transcription start site region 6892
Tssr11837 1 59710544 to 59710620 76 - TSS region transcription start site region 11837
B430105G09Rik 1 59762208 to 59764250 2042 unclassified gene RIKEN cDNA B430105G09 gene
Cpgi296 1 59762654 to 59764947 2293 CpG island CpG island 296
Tssr11838 1 59763304 to 59763317 13 - TSS region transcription start site region 11838
Tssr11839 1 59763336 to 59763356 20 - TSS region transcription start site region 11839
Tssr6893 1 59763384 to 59763395 11 + TSS region transcription start site region 6893
Tssr6894 1 59763418 to 59763462 44 + TSS region transcription start site region 6894
Tssr6895 1 59763506 to 59763525 19 + TSS region transcription start site region 6895
Tssr6896 1 59763531 to 59763575 44 + TSS region transcription start site region 6896
Tssr6897 1 59763684 to 59763685 1 + TSS region transcription start site region 6897
Tssr6898 1 59763693 to 59763702 9 + TSS region transcription start site region 6898
Tssr6899 1 59763716 to 59763730 14 + TSS region transcription start site region 6899
Tssr6900 1 59763753 to 59763764 11 + TSS region transcription start site region 6900
Tssr6901 1 59763936 to 59763991 55 + TSS region transcription start site region 6901
Tssr6902 1 59764264 to 59764286 22 + TSS region transcription start site region 6902
Bmpr2 1 59764270 to 59878081 113811 + protein coding gene bone morphogenetic protein receptor, type II (serine/threonine kinase)
Tssr6903 1 59764304 to 59764326 22 + TSS region transcription start site region 6903
Tssr11840 1 59764829 to 59764838 9 - TSS region transcription start site region 11840
Gm38125 1 59801263 to 59804700 3437 + unclassified gene predicted gene, 38125
Tssr6904 1 59815977 to 59815981 4 + TSS region transcription start site region 6904
Tssr6905 1 59860375 to 59860383 8 + TSS region transcription start site region 6905
Tssr6906 1 59867345 to 59867391 46 + TSS region transcription start site region 6906
Tssr6907 1 59872583 to 59872595 12 + TSS region transcription start site region 6907
Tssr6908 1 59874760 to 59874763 3 + TSS region transcription start site region 6908
Tssr6909 1 59875096 to 59875120 24 + TSS region transcription start site region 6909
Tssr6910 1 59875196 to 59875209 13 + TSS region transcription start site region 6910
Gm37977 1 59886969 to 59887689 720 - unclassified gene predicted gene, 37977
Vertcling 1 59898872 to 59899008 136 QTL vertical clinging
D1Mit22 1 59898872 to 59899008 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 22
Dbf 1 59898872 to 82966353 23067481 heritable phenotypic marker doublefoot
Cpgi297 1 59912477 to 59914206 1729 CpG island CpG island 297
Tssr6911 1 59912972 to 59913027 55 + TSS region transcription start site region 6911
Fam117b 1 59913006 to 59985346 72340 + protein coding gene family with sequence similarity 117, member B
Tssr6912 1 59913053 to 59913064 11 + TSS region transcription start site region 6912
Tssr6913 1 59913076 to 59913092 16 + TSS region transcription start site region 6913
Tssr6914 1 59913483 to 59913536 53 + TSS region transcription start site region 6914
Gm37531 1 59929688 to 59935102 5414 + unclassified gene predicted gene, 37531
Gm18829 1 59950406 to 59952464 2058 - pseudogene predicted gene, 18829
Tssr6915 1 59959191 to 59959195 4 + TSS region transcription start site region 6915
Tssr6916 1 59977962 to 59977964 2 + TSS region transcription start site region 6916
Ica1l 1 59989068 to 60043512 54444 - protein coding gene islet cell autoantigen 1-like
Tssr11841 1 59990974 to 59990990 16 - TSS region transcription start site region 11841
Cpgi298 1 60042472 to 60043649 1177 CpG island CpG island 298
Tssr11842 1 60042931 to 60042975 44 - TSS region transcription start site region 11842
Tssr11843 1 60043092 to 60043175 83 - TSS region transcription start site region 11843
D1Wsu158e 1 60074991 to 60075177 186 DNA segment DNA segment, Chr 1, Wayne State University 158, expressed
Wdr12 1 60076868 to 60098500 21632 - protein coding gene WD repeat domain 12
Cpgi299 1 60097579 to 60097775 196 CpG island CpG island 299
Tssr11844 1 60097612 to 60097702 90 - TSS region transcription start site region 11844
Tssr11845 1 60097893 to 60097924 31 - TSS region transcription start site region 11845
Cpgi300 1 60098069 to 60098829 760 CpG island CpG island 300
Tssr11846 1 60098104 to 60098118 14 - TSS region transcription start site region 11846
Tssr11847 1 60098140 to 60098151 11 - TSS region transcription start site region 11847
Tssr11848 1 60098167 to 60098187 20 - TSS region transcription start site region 11848
Tssr11849 1 60098188 to 60098199 11 - TSS region transcription start site region 11849
Carf 1 60098247 to 60153953 55706 + protein coding gene calcium response factor