Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:58411064-59041075

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clk1 1 58411988 to 58424088 12100 - protein coding gene CDC-like kinase 1
Tssr11776 1 58419995 to 58420006 11 - TSS region transcription start site region 11776
Tssr11777 1 58420315 to 58420331 16 - TSS region transcription start site region 11777
Tssr11778 1 58422844 to 58422849 5 - TSS region transcription start site region 11778
Cpgi278 1 58423327 to 58424273 946 CpG island CpG island 278
Tssr11779 1 58424007 to 58424028 21 - TSS region transcription start site region 11779
Tssr11780 1 58424042 to 58424064 22 - TSS region transcription start site region 11780
Ppil3 1 58430994 to 58445486 14492 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 3
Tssr6776 1 58431398 to 58431400 2 + TSS region transcription start site region 6776
Cpgi279 1 58445066 to 58445703 637 CpG island CpG island 279
Nif3l1 1 58445156 to 58462276 17120 + protein coding gene Ngg1 interacting factor 3-like 1 (S. pombe)
Tssr11781 1 58445161 to 58445202 41 - TSS region transcription start site region 11781
Tssr6777 1 58445259 to 58445307 48 + TSS region transcription start site region 6777
Tssr11782 1 58445406 to 58445491 85 - TSS region transcription start site region 11782
Tssr6778 1 58445510 to 58445528 18 + TSS region transcription start site region 6778
Tssr6779 1 58445531 to 58445618 87 + TSS region transcription start site region 6779
Tssr92 1 58449526 to 58449532 6 + TSS region transcription start site region 92
Orc2 1 58462771 to 58505109 42338 - protein coding gene origin recognition complex, subunit 2
Gm23966 1 58466515 to 58466621 106 - snRNA gene predicted gene, 23966
Cpgi280 1 58504434 to 58505244 810 CpG island CpG island 280
Tssr11783 1 58504919 to 58504942 23 - TSS region transcription start site region 11783
Tssr11784 1 58504946 to 58504965 19 - TSS region transcription start site region 11784
Tssr6780 1 58505135 to 58505162 27 + TSS region transcription start site region 6780
Gm15834 1 58505148 to 58523230 18082 + lincRNA gene predicted gene 15834
Fam126b 1 58522806 to 58586323 63517 - protein coding gene family with sequence similarity 126, member B
Tssr11785 1 58581973 to 58581978 5 - TSS region transcription start site region 11785
D1Mit324 1 58583625 to 58583862 237 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 324
Cpgi281 1 58585808 to 58586797 989 CpG island CpG island 281
Tssr11786 1 58586240 to 58586318 78 - TSS region transcription start site region 11786
Tssr6781 1 58586381 to 58586401 20 + TSS region transcription start site region 6781
Ndufb3 1 58586397 to 58595964 9567 + protein coding gene NADH:ubiquinone oxidoreductase subunit B3
Tssr6782 1 58586405 to 58586446 41 + TSS region transcription start site region 6782
Tssr6783 1 58586591 to 58586625 34 + TSS region transcription start site region 6783
Tssr93 1 58586628 to 58586641 13 + TSS region transcription start site region 93
Gm29389 1 58625214 to 58625565 351 - pseudogene predicted gene 29389
Gm18802 1 58636760 to 58637347 587 + pseudogene predicted gene, 18802
Cbx3-ps7 1 58646688 to 58647239 551 + pseudogene chromobox 3, pseudogene 7
Cpgi282 1 58652487 to 58652978 491 CpG island CpG island 282
Tssr6784 1 58652588 to 58652626 38 + TSS region transcription start site region 6784
Gm20257 1 58652641 to 58655831 3190 + pseudogene predicted gene, 20257
Flacc1 1 58656926 to 58696009 39083 - protein coding gene flagellum associated containing coiled-coil domains 1
D1Mit75a 1 58691390 to 58691579 189 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 75a
Tssr11787 1 58695944 to 58695964 20 - TSS region transcription start site region 11787
Gm28803 1 58702309 to 58703986 1677 + pseudogene predicted gene 28803
Cpgi283 1 58711382 to 58711934 552 CpG island CpG island 283
Tssr6785 1 58711462 to 58711473 11 + TSS region transcription start site region 6785
Tssr6786 1 58711488 to 58711523 35 + TSS region transcription start site region 6786
Cflar 1 58711508 to 58758884 47376 + protein coding gene CASP8 and FADD-like apoptosis regulator
Tssr6787 1 58712061 to 58712089 28 + TSS region transcription start site region 6787
Tssr11788 1 58712222 to 58712245 23 - TSS region transcription start site region 11788
Tssr6788 1 58712396 to 58712434 38 + TSS region transcription start site region 6788
Tssr6789 1 58713204 to 58713217 13 + TSS region transcription start site region 6789
Tssr6790 1 58713241 to 58713314 73 + TSS region transcription start site region 6790
Cpgi284 1 58713302 to 58713671 369 CpG island CpG island 284
Tssr6791 1 58713320 to 58713332 12 + TSS region transcription start site region 6791
Tssr6792 1 58713378 to 58713381 3 + TSS region transcription start site region 6792
Tssr6793 1 58713446 to 58713457 11 + TSS region transcription start site region 6793
Tssr6794 1 58714164 to 58714200 36 + TSS region transcription start site region 6794
Tssr6795 1 58714316 to 58714323 7 + TSS region transcription start site region 6795
Tssr6796 1 58714644 to 58714657 13 + TSS region transcription start site region 6796
Tssr6797 1 58716842 to 58716845 3 + TSS region transcription start site region 6797
Tssr6798 1 58717450 to 58717469 19 + TSS region transcription start site region 6798
Tssr11789 1 58721102 to 58721114 12 - TSS region transcription start site region 11789
Tssr6799 1 58722729 to 58722747 18 + TSS region transcription start site region 6799
Tssr11790 1 58725887 to 58725898 11 - TSS region transcription start site region 11790
Tssr6800 1 58726016 to 58726063 47 + TSS region transcription start site region 6800
Tssr6801 1 58726064 to 58726075 11 + TSS region transcription start site region 6801
Tssr6802 1 58726095 to 58726106 11 + TSS region transcription start site region 6802
Tssr6803 1 58726164 to 58726178 14 + TSS region transcription start site region 6803
Tssr6804 1 58726196 to 58726222 26 + TSS region transcription start site region 6804
Tssr11791 1 58727092 to 58727112 20 - TSS region transcription start site region 11791
Tssr6805 1 58727250 to 58727261 11 + TSS region transcription start site region 6805
Tssr6806 1 58728615 to 58728626 11 + TSS region transcription start site region 6806
Tssr6807 1 58728652 to 58728698 46 + TSS region transcription start site region 6807
Tssr6808 1 58728713 to 58728724 11 + TSS region transcription start site region 6808
Tssr6809 1 58729557 to 58729559 2 + TSS region transcription start site region 6809
Cpgi285 1 58737003 to 58737174 171 CpG island CpG island 285
Tssr6810 1 58738432 to 58738452 20 + TSS region transcription start site region 6810
Tssr6811 1 58738652 to 58738673 21 + TSS region transcription start site region 6811
Tssr6812 1 58738974 to 58738997 23 + TSS region transcription start site region 6812
Tssr6813 1 58743547 to 58743550 3 + TSS region transcription start site region 6813
Tssr6814 1 58745144 to 58745152 8 + TSS region transcription start site region 6814
Tssr6815 1 58749393 to 58749419 26 + TSS region transcription start site region 6815
Tssr6816 1 58753694 to 58753699 5 + TSS region transcription start site region 6816
Tssr6817 1 58754074 to 58754121 47 + TSS region transcription start site region 6817
Tssr6818 1 58754742 to 58754758 16 + TSS region transcription start site region 6818
Tssr6819 1 58754802 to 58754821 19 + TSS region transcription start site region 6819
Tssr6820 1 58754881 to 58754896 15 + TSS region transcription start site region 6820
Tssr6821 1 58754915 to 58754926 11 + TSS region transcription start site region 6821
Tssr6822 1 58754982 to 58754993 11 + TSS region transcription start site region 6822
Tssr6823 1 58755081 to 58755092 11 + TSS region transcription start site region 6823
Tssr6824 1 58755115 to 58755127 12 + TSS region transcription start site region 6824
Tssr6825 1 58755222 to 58755234 12 + TSS region transcription start site region 6825
Tssr6826 1 58755323 to 58755340 17 + TSS region transcription start site region 6826
Tssr6827 1 58755957 to 58755968 11 + TSS region transcription start site region 6827
Tssr6828 1 58756266 to 58756281 15 + TSS region transcription start site region 6828
Tssr6829 1 58756298 to 58756313 15 + TSS region transcription start site region 6829
Tssr6830 1 58756345 to 58756401 56 + TSS region transcription start site region 6830
Tssr6831 1 58756806 to 58756823 17 + TSS region transcription start site region 6831
Tssr6832 1 58758379 to 58758403 24 + TSS region transcription start site region 6832
Gm39646 1 58767583 to 58791874 24291 - lncRNA gene predicted gene, 39646
Gm3841 1 58785209 to 58785659 450 + pseudogene predicted gene 3841
Tssr6833 1 58795371 to 58795447 76 + TSS region transcription start site region 6833
Casp8 1 58795374 to 58847503 52129 + protein coding gene caspase 8
Tssr6834 1 58795462 to 58795559 97 + TSS region transcription start site region 6834
Cpgi286 1 58795511 to 58795936 425 CpG island CpG island 286
Tssr6835 1 58795587 to 58795601 14 + TSS region transcription start site region 6835
Tssr6836 1 58795618 to 58795639 21 + TSS region transcription start site region 6836
Tssr6837 1 58795656 to 58795667 11 + TSS region transcription start site region 6837
Tssr6838 1 58795671 to 58795682 11 + TSS region transcription start site region 6838
Tssr6839 1 58795692 to 58795710 18 + TSS region transcription start site region 6839
Tssr6840 1 58795931 to 58795945 14 + TSS region transcription start site region 6840
Tssr6841 1 58796324 to 58796336 12 + TSS region transcription start site region 6841
Gm37760 1 58797783 to 58801623 3840 + unclassified gene predicted gene, 37760
Tssr6842 1 58802492 to 58802517 25 + TSS region transcription start site region 6842
Tssr6843 1 58802537 to 58802542 5 + TSS region transcription start site region 6843
Tssr6844 1 58802577 to 58802580 3 + TSS region transcription start site region 6844
Tssr6845 1 58802594 to 58802637 43 + TSS region transcription start site region 6845
Tssr6846 1 58802649 to 58802656 7 + TSS region transcription start site region 6846
Tssr11792 1 58804782 to 58804792 10 - TSS region transcription start site region 11792
D1Mit414 1 58807051 to 58807158 107 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 414
Tssr6847 1 58831585 to 58831632 47 + TSS region transcription start site region 6847
Tssr6848 1 58846803 to 58846818 15 + TSS region transcription start site region 6848
Tssr6849 1 58846870 to 58846888 18 + TSS region transcription start site region 6849
Tssr6850 1 58846914 to 58846935 21 + TSS region transcription start site region 6850
Gm28802 1 58850085 to 58892792 42707 - pseudogene predicted gene 28802
D1Mit75b 1 58891199 to 58891369 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 75b
Trak2 1 58900449 to 58973430 72981 - protein coding gene trafficking protein, kinesin binding 2
Tssr11793 1 58962506 to 58962517 11 - TSS region transcription start site region 11793
Tssr11794 1 58962557 to 58962561 4 - TSS region transcription start site region 11794
Tssr11795 1 58972693 to 58972697 4 - TSS region transcription start site region 11795
Cpgi287 1 58972892 to 58974232 1340 CpG island CpG island 287
Tssr11796 1 58973286 to 58973300 14 - TSS region transcription start site region 11796
Tssr11797 1 58973312 to 58973325 13 - TSS region transcription start site region 11797
Tssr11798 1 58973335 to 58973354 19 - TSS region transcription start site region 11798
Tssr11799 1 58973355 to 58973381 26 - TSS region transcription start site region 11799
Tssr11800 1 58973386 to 58973397 11 - TSS region transcription start site region 11800
Tssr11801 1 58973421 to 58973440 19 - TSS region transcription start site region 11801
Tssr11802 1 58973450 to 58973461 11 - TSS region transcription start site region 11802
Tssr11803 1 58973476 to 58973486 10 - TSS region transcription start site region 11803
Tssr6851 1 58973521 to 58973582 61 + TSS region transcription start site region 6851
Stradb 1 58973527 to 58995126 21599 + protein coding gene STE20-related kinase adaptor beta
Tssr6852 1 58973594 to 58973613 19 + TSS region transcription start site region 6852
Tssr6853 1 58973631 to 58973659 28 + TSS region transcription start site region 6853
Tssr6854 1 58973661 to 58973684 23 + TSS region transcription start site region 6854
Tssr6855 1 58973690 to 58973701 11 + TSS region transcription start site region 6855
Tssr6856 1 58973702 to 58973717 15 + TSS region transcription start site region 6856
Tssr11804 1 58982618 to 58982623 5 - TSS region transcription start site region 11804
C2cd6 1 58997123 to 59003539 6416 - protein coding gene C2 calcium dependent domain containing 6
Tssr11805 1 59003535 to 59003540 5 - TSS region transcription start site region 11805
Tssr11806 1 59014070 to 59014075 5 - TSS region transcription start site region 11806
Tssr11807 1 59014086 to 59014093 7 - TSS region transcription start site region 11807
Tssr11808 1 59014096 to 59014104 8 - TSS region transcription start site region 11808
Tssr11809 1 59014106 to 59014115 9 - TSS region transcription start site region 11809
Tssr11810 1 59014121 to 59014151 30 - TSS region transcription start site region 11810
Tssr6857 1 59014190 to 59014209 19 + TSS region transcription start site region 6857
Gm29018 1 59035934 to 59038188 2254 + antisense lncRNA gene predicted gene 29018