Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:58033965-58434112

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hbnr1 1 25511110 to 58234112 32723002 QTL Heligmosomoides bakeri nematode resistance 1
Aox1 1 58029931 to 58106413 76482 + protein coding gene aldehyde oxidase 1
Tssr11773 1 58045273 to 58045276 3 - TSS region transcription start site region 11773
Aox3 1 58113135 to 58200452 87317 + protein coding gene aldehyde oxidase 3
Tssr6758 1 58113166 to 58113184 18 + TSS region transcription start site region 6758
Tssr6759 1 58115351 to 58115394 43 + TSS region transcription start site region 6759
Gm39643 1 58115415 to 58140751 25336 - lncRNA gene predicted gene, 39643
Tssr6760 1 58115419 to 58115433 14 + TSS region transcription start site region 6760
Tssr6761 1 58122228 to 58122251 23 + TSS region transcription start site region 6761
Gm24548 1 58154981 to 58155088 107 - snoRNA gene predicted gene, 24548
D1Mit376 1 58166917 to 58167048 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 376
D1Mit376.1 1 58167050 to 58167162 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 376.1
D1Mit531 1 58180132 to 58180240 108 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 531
Tssr6762 1 58183498 to 58183499 1 + TSS region transcription start site region 6762
Aox4 1 58210397 to 58268597 58200 + protein coding gene aldehyde oxidase 4
Tssr6763 1 58210443 to 58210457 14 + TSS region transcription start site region 6763
Thypr2 1 58233965 to 58234112 147 QTL thymocyte proliferative response 2
D1Mit214 1 58233965 to 58234112 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 214
Bswt 1 58233965 to 63884110 5650145 heritable phenotypic marker belly spot with white toes
D1Mit5.2 1 58257371 to 58257546 175 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 5.2
Tssr6764 1 58278309 to 58278311 2 + TSS region transcription start site region 6764
Aox2 1 58278326 to 58379264 100938 + protein coding gene aldehyde oxidase 2
Gm15759 1 58289415 to 58315429 26014 - antisense lncRNA gene predicted gene 15759
Gm37607 1 58383512 to 58386134 2622 - unclassified gene predicted gene, 37607
Gm6860 1 58388767 to 58388990 223 - pseudogene predicted gene 6860
Tssr6765 1 58392592 to 58392598 6 + TSS region transcription start site region 6765
Cpgi277 1 58392628 to 58394003 1375 CpG island CpG island 277
Tssr11774 1 58392741 to 58392764 23 - TSS region transcription start site region 11774
Tssr6766 1 58392863 to 58392879 16 + TSS region transcription start site region 6766
Tssr6767 1 58392966 to 58392986 20 + TSS region transcription start site region 6767
Tssr11775 1 58393046 to 58393067 21 - TSS region transcription start site region 11775
Tssr6768 1 58393119 to 58393147 28 + TSS region transcription start site region 6768
Bzw1 1 58393136 to 58407354 14218 + protein coding gene basic leucine zipper and W2 domains 1
Tssr6769 1 58393193 to 58393241 48 + TSS region transcription start site region 6769
Tssr91 1 58393366 to 58393373 7 - TSS region transcription start site region 91
Tssr6770 1 58393471 to 58393482 11 + TSS region transcription start site region 6770
Tssr6771 1 58393483 to 58393496 13 + TSS region transcription start site region 6771
Tssr6772 1 58393501 to 58393522 21 + TSS region transcription start site region 6772
Tssr6773 1 58406527 to 58406536 9 + TSS region transcription start site region 6773
Tssr6774 1 58406799 to 58406824 25 + TSS region transcription start site region 6774
Tssr6775 1 58406838 to 58406875 37 + TSS region transcription start site region 6775
Clk1 1 58411988 to 58424088 12100 - protein coding gene CDC-like kinase 1
Tssr11776 1 58419995 to 58420006 11 - TSS region transcription start site region 11776
Tssr11777 1 58420315 to 58420331 16 - TSS region transcription start site region 11777
Tssr11778 1 58422844 to 58422849 5 - TSS region transcription start site region 11778
Cpgi278 1 58423327 to 58424273 946 CpG island CpG island 278
Tssr11779 1 58424007 to 58424028 21 - TSS region transcription start site region 11779
Tssr11780 1 58424042 to 58424064 22 - TSS region transcription start site region 11780
Ppil3 1 58430994 to 58445486 14492 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 3
Tssr6776 1 58431398 to 58431400 2 + TSS region transcription start site region 6776