Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:57169842-58379932

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hbnr1 1 25511110 to 58234112 32723002 QTL Heligmosomoides bakeri nematode resistance 1
BC055402 1 57200645 to 57214993 14348 - lincRNA gene cDNA sequence BC055402
Gm5254 1 57291425 to 57292401 976 - pseudogene predicted gene 5254
4930558J18Rik 1 57359222 to 57377544 18322 - lincRNA gene RIKEN cDNA 4930558J18 gene
Cpgi272 1 57377366 to 57378266 900 CpG island CpG island 272
Tssr11764 1 57377476 to 57377539 63 - TSS region transcription start site region 11764
Tssr6743 1 57377593 to 57377689 96 + TSS region transcription start site region 6743
1700066M21Rik 1 57377620 to 57385423 7803 + protein coding gene RIKEN cDNA 1700066M21 gene
Tyw5 1 57388235 to 57406674 18439 - protein coding gene tRNA-yW synthesizing protein 5
Tssr11765 1 57391481 to 57391491 10 - TSS region transcription start site region 11765
Tssr11766 1 57396693 to 57396697 4 - TSS region transcription start site region 11766
Cpgi273 1 57406106 to 57407299 1193 CpG island CpG island 273
Tssr11767 1 57406446 to 57406507 61 - TSS region transcription start site region 11767
Maip1 1 57406548 to 57415958 9410 + protein coding gene matrix AAA peptidase interacting protein 1
Tssr6744 1 57406728 to 57406774 46 + TSS region transcription start site region 6744
Gm22371 1 57422244 to 57422373 129 - snoRNA gene predicted gene, 22371
Gm24014 1 57467870 to 57468026 156 + snRNA gene predicted gene, 24014
Gm8581 1 57518526 to 57519368 842 - pseudogene predicted gene 8581
Tssr11768 1 57519423 to 57519441 18 - TSS region transcription start site region 11768
Gm37373 1 57520831 to 57523642 2811 - unclassified gene predicted gene, 37373
D1Mit74 1 57550967 to 57551104 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 74
Gm17929 1 57561298 to 57561850 552 - pseudogene predicted gene, 17929
Tssr6745 1 57576696 to 57576697 1 + TSS region transcription start site region 6745
D1Mit124 1 57689117 to 57689261 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 124
Idd5.1 1 57689117 to 62907723 5218606 QTL insulin dependent diabetes susceptibility 5.1
Tssr6746 1 57732962 to 57732980 18 + TSS region transcription start site region 6746
Spats2l 1 57774162 to 57948394 174232 + protein coding gene spermatogenesis associated, serine-rich 2-like
Cpgi274 1 57774186 to 57775772 1586 CpG island CpG island 274
Tssr6747 1 57774748 to 57774762 14 + TSS region transcription start site region 6747
Tssr6748 1 57774842 to 57774932 90 + TSS region transcription start site region 6748
Tssr6749 1 57774933 to 57774955 22 + TSS region transcription start site region 6749
Tssr6750 1 57777069 to 57777072 3 + TSS region transcription start site region 6750
Tssr6751 1 57845534 to 57845553 19 + TSS region transcription start site region 6751
Tssr6752 1 57845593 to 57845617 24 + TSS region transcription start site region 6752
Tssr6753 1 57901943 to 57901977 34 + TSS region transcription start site region 6753
Gm17234 1 57909835 to 57917111 7276 - antisense lncRNA gene predicted gene 17234
Kctd18 1 57955101 to 57970084 14983 - protein coding gene potassium channel tetramerisation domain containing 18
Cpgi275 1 57969406 to 57970361 955 CpG island CpG island 275
Tssr11769 1 57970008 to 57970022 14 - TSS region transcription start site region 11769
Tssr11770 1 57970032 to 57970065 33 - TSS region transcription start site region 11770
Tssr11771 1 57970067 to 57970094 27 - TSS region transcription start site region 11771
Tssr11772 1 57970104 to 57970118 14 - TSS region transcription start site region 11772
Cpgi276 1 57995724 to 57996410 686 CpG island CpG island 276
Sgo2a 1 57995971 to 58025899 29928 + protein coding gene shugoshin 2A
Tssr6754 1 57995980 to 57996059 79 + TSS region transcription start site region 6754
Tssr6755 1 57996061 to 57996072 11 + TSS region transcription start site region 6755
Aox1 1 58029931 to 58106413 76482 + protein coding gene aldehyde oxidase 1
Tssr6756 1 58029955 to 58029974 19 + TSS region transcription start site region 6756
Tssr6757 1 58029984 to 58029997 13 + TSS region transcription start site region 6757
Tssr11773 1 58045273 to 58045276 3 - TSS region transcription start site region 11773
Aox3 1 58113135 to 58200452 87317 + protein coding gene aldehyde oxidase 3
Tssr6758 1 58113166 to 58113184 18 + TSS region transcription start site region 6758
Tssr6759 1 58115351 to 58115394 43 + TSS region transcription start site region 6759
Gm39643 1 58115415 to 58140751 25336 - lncRNA gene predicted gene, 39643
Tssr6760 1 58115419 to 58115433 14 + TSS region transcription start site region 6760
Tssr6761 1 58122228 to 58122251 23 + TSS region transcription start site region 6761
Gm24548 1 58154981 to 58155088 107 - snoRNA gene predicted gene, 24548
D1Mit376 1 58166917 to 58167048 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 376
D1Mit376.1 1 58167050 to 58167162 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 376.1
D1Mit531 1 58180132 to 58180240 108 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 531
Tssr6762 1 58183498 to 58183499 1 + TSS region transcription start site region 6762
Aox4 1 58210397 to 58268597 58200 + protein coding gene aldehyde oxidase 4
Tssr6763 1 58210443 to 58210457 14 + TSS region transcription start site region 6763
Thypr2 1 58233965 to 58234112 147 QTL thymocyte proliferative response 2
Bswt 1 58233965 to 63884110 5650145 heritable phenotypic marker belly spot with white toes
D1Mit214 1 58233965 to 58234112 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 214
D1Mit5.2 1 58257371 to 58257546 175 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 5.2
Tssr6764 1 58278309 to 58278311 2 + TSS region transcription start site region 6764
Aox2 1 58278326 to 58379264 100938 + protein coding gene aldehyde oxidase 2
Gm15759 1 58289415 to 58315429 26014 - antisense lncRNA gene predicted gene 15759