Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:57122870-57813026

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr6741 1 57127305 to 57127340 35 + TSS region transcription start site region 6741
1700126A01Rik 1 57127340 to 57129400 2060 + lincRNA gene RIKEN cDNA 1700126A01 gene
Tssr6742 1 57154587 to 57154588 1 + TSS region transcription start site region 6742
BC055402 1 57200645 to 57214993 14348 - lincRNA gene cDNA sequence BC055402
Gm5254 1 57291425 to 57292401 976 - pseudogene predicted gene 5254
4930558J18Rik 1 57359222 to 57377544 18322 - lincRNA gene RIKEN cDNA 4930558J18 gene
Cpgi272 1 57377366 to 57378266 900 CpG island CpG island 272
Tssr11764 1 57377476 to 57377539 63 - TSS region transcription start site region 11764
Tssr6743 1 57377593 to 57377689 96 + TSS region transcription start site region 6743
1700066M21Rik 1 57377620 to 57385423 7803 + protein coding gene RIKEN cDNA 1700066M21 gene
Tyw5 1 57388235 to 57406674 18439 - protein coding gene tRNA-yW synthesizing protein 5
Tssr11765 1 57391481 to 57391491 10 - TSS region transcription start site region 11765
Tssr11766 1 57396693 to 57396697 4 - TSS region transcription start site region 11766
Cpgi273 1 57406106 to 57407299 1193 CpG island CpG island 273
Tssr11767 1 57406446 to 57406507 61 - TSS region transcription start site region 11767
Maip1 1 57406548 to 57415958 9410 + protein coding gene matrix AAA peptidase interacting protein 1
Tssr6744 1 57406728 to 57406774 46 + TSS region transcription start site region 6744
Gm22371 1 57422244 to 57422373 129 - snoRNA gene predicted gene, 22371
Gm24014 1 57467870 to 57468026 156 + snRNA gene predicted gene, 24014
Gm8581 1 57518526 to 57519368 842 - pseudogene predicted gene 8581
Tssr11768 1 57519423 to 57519441 18 - TSS region transcription start site region 11768
Gm37373 1 57520831 to 57523642 2811 - unclassified gene predicted gene, 37373
D1Mit74 1 57550967 to 57551104 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 74
Gm17929 1 57561298 to 57561850 552 - pseudogene predicted gene, 17929
Tssr6745 1 57576696 to 57576697 1 + TSS region transcription start site region 6745
D1Mit124 1 57689117 to 57689261 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 124
Idd5.1 1 57689117 to 62907723 5218606 QTL insulin dependent diabetes susceptibility 5.1
Tssr6746 1 57732962 to 57732980 18 + TSS region transcription start site region 6746
Spats2l 1 57774162 to 57948394 174232 + protein coding gene spermatogenesis associated, serine-rich 2-like
Cpgi274 1 57774186 to 57775772 1586 CpG island CpG island 274
Tssr6747 1 57774748 to 57774762 14 + TSS region transcription start site region 6747
Tssr6748 1 57774842 to 57774932 90 + TSS region transcription start site region 6748
Tssr6749 1 57774933 to 57774955 22 + TSS region transcription start site region 6749
Tssr6750 1 57777069 to 57777072 3 + TSS region transcription start site region 6750