Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:56972340-57284400

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22 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Satb2 1 56793981 to 56978650 184669 - protein coding gene special AT-rich sequence binding protein 2
Cpgi269 1 56971462 to 56973701 2239 CpG island CpG island 269
9130024F11Rik 1 56971469 to 56975196 3727 + lncRNA gene RIKEN cDNA 9130024F11 gene
Tssr11757 1 56972437 to 56972482 45 - TSS region transcription start site region 11757
Tssr6739 1 56972555 to 56972589 34 + TSS region transcription start site region 6739
Tssr6740 1 56974032 to 56974036 4 + TSS region transcription start site region 6740
Tssr11758 1 56974500 to 56974520 20 - TSS region transcription start site region 11758
Cpgi270 1 56976635 to 56978020 1385 CpG island CpG island 270
Gm4081 1 56976803 to 56978640 1837 + unclassified gene predicted gene 4081
Tssr11759 1 56978494 to 56978511 17 - TSS region transcription start site region 11759
Tssr11760 1 56978512 to 56978524 12 - TSS region transcription start site region 11760
Tssr11761 1 56978534 to 56978544 10 - TSS region transcription start site region 11761
Tssr11762 1 56981118 to 56981127 9 - TSS region transcription start site region 11762
Cpgi271 1 56984329 to 56984740 411 CpG island CpG island 271
Gm23943 1 56999155 to 56999275 120 - miRNA gene predicted gene, 23943
D1Mit377 1 57000792 to 57000954 162 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 377
Gm38484 1 57002504 to 57042519 40015 + lncRNA gene predicted gene, 38484
Tssr11763 1 57098885 to 57098896 11 - TSS region transcription start site region 11763
Tssr6741 1 57127305 to 57127340 35 + TSS region transcription start site region 6741
1700126A01Rik 1 57127340 to 57129400 2060 + lincRNA gene RIKEN cDNA 1700126A01 gene
Tssr6742 1 57154587 to 57154588 1 + TSS region transcription start site region 6742
BC055402 1 57200645 to 57214993 14348 - lincRNA gene cDNA sequence BC055402