Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:56778965-65339110

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1024 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col4a1m1 1 25511110 to 62907723 37396613 QTL collagen, type IV, alpha 1 modifier 1
Hbnr1 1 25511110 to 58234112 32723002 QTL Heligmosomoides bakeri nematode resistance 1
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Tssr11738 1 56782165 to 56782210 45 - TSS region transcription start site region 11738
Tssr11739 1 56782216 to 56782225 9 - TSS region transcription start site region 11739
Tssr11740 1 56782391 to 56782399 8 - TSS region transcription start site region 11740
Satb2 1 56793981 to 56978650 184669 - protein coding gene special AT-rich sequence binding protein 2
Tssr11741 1 56796169 to 56796180 11 - TSS region transcription start site region 11741
Tssr90 1 56869108 to 56869113 5 - TSS region transcription start site region 90
Tssr11742 1 56871360 to 56871364 4 - TSS region transcription start site region 11742
Tssr11743 1 56871687 to 56871691 4 - TSS region transcription start site region 11743
Tssr11744 1 56899090 to 56899100 10 - TSS region transcription start site region 11744
Cpgi267 1 56969505 to 56970001 496 CpG island CpG island 267
Tssr11745 1 56969827 to 56969850 23 - TSS region transcription start site region 11745
Tssr11746 1 56969864 to 56969875 11 - TSS region transcription start site region 11746
Cpgi268 1 56970829 to 56971217 388 CpG island CpG island 268
Tssr11747 1 56971267 to 56971278 11 - TSS region transcription start site region 11747
Tssr11748 1 56971281 to 56971305 24 - TSS region transcription start site region 11748
Tssr11749 1 56971313 to 56971329 16 - TSS region transcription start site region 11749
Tssr11750 1 56971338 to 56971347 9 - TSS region transcription start site region 11750
Tssr6736 1 56971451 to 56971505 54 + TSS region transcription start site region 6736
Cpgi269 1 56971462 to 56973701 2239 CpG island CpG island 269
9130024F11Rik 1 56971469 to 56975196 3727 + lncRNA gene RIKEN cDNA 9130024F11 gene
Tssr11751 1 56971694 to 56971709 15 - TSS region transcription start site region 11751
Tssr11752 1 56971712 to 56971739 27 - TSS region transcription start site region 11752
Tssr11753 1 56971750 to 56971760 10 - TSS region transcription start site region 11753
Tssr11754 1 56971762 to 56971781 19 - TSS region transcription start site region 11754
Tssr6737 1 56972033 to 56972044 11 + TSS region transcription start site region 6737
Tssr6738 1 56972180 to 56972206 26 + TSS region transcription start site region 6738
Tssr11755 1 56972183 to 56972212 29 - TSS region transcription start site region 11755
Tssr11756 1 56972232 to 56972254 22 - TSS region transcription start site region 11756
Tssr11757 1 56972437 to 56972482 45 - TSS region transcription start site region 11757
Tssr6739 1 56972555 to 56972589 34 + TSS region transcription start site region 6739
Tssr6740 1 56974032 to 56974036 4 + TSS region transcription start site region 6740
Tssr11758 1 56974500 to 56974520 20 - TSS region transcription start site region 11758
Cpgi270 1 56976635 to 56978020 1385 CpG island CpG island 270
Gm4081 1 56976803 to 56978640 1837 + unclassified gene predicted gene 4081
Tssr11759 1 56978494 to 56978511 17 - TSS region transcription start site region 11759
Tssr11760 1 56978512 to 56978524 12 - TSS region transcription start site region 11760
Tssr11761 1 56978534 to 56978544 10 - TSS region transcription start site region 11761
Tssr11762 1 56981118 to 56981127 9 - TSS region transcription start site region 11762
Cpgi271 1 56984329 to 56984740 411 CpG island CpG island 271
Gm23943 1 56999155 to 56999275 120 - miRNA gene predicted gene, 23943
D1Mit377 1 57000792 to 57000954 162 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 377
Gm38484 1 57002504 to 57042519 40015 + lncRNA gene predicted gene, 38484
Tssr11763 1 57098885 to 57098896 11 - TSS region transcription start site region 11763
Tssr6741 1 57127305 to 57127340 35 + TSS region transcription start site region 6741
1700126A01Rik 1 57127340 to 57129400 2060 + lincRNA gene RIKEN cDNA 1700126A01 gene
Tssr6742 1 57154587 to 57154588 1 + TSS region transcription start site region 6742
BC055402 1 57200645 to 57214993 14348 - lincRNA gene cDNA sequence BC055402
Gm5254 1 57291425 to 57292401 976 - pseudogene predicted gene 5254
4930558J18Rik 1 57359222 to 57377544 18322 - lincRNA gene RIKEN cDNA 4930558J18 gene
Cpgi272 1 57377366 to 57378266 900 CpG island CpG island 272
Tssr11764 1 57377476 to 57377539 63 - TSS region transcription start site region 11764
Tssr6743 1 57377593 to 57377689 96 + TSS region transcription start site region 6743
1700066M21Rik 1 57377620 to 57385423 7803 + protein coding gene RIKEN cDNA 1700066M21 gene
Tyw5 1 57388235 to 57406674 18439 - protein coding gene tRNA-yW synthesizing protein 5
Tssr11765 1 57391481 to 57391491 10 - TSS region transcription start site region 11765
Tssr11766 1 57396693 to 57396697 4 - TSS region transcription start site region 11766
Cpgi273 1 57406106 to 57407299 1193 CpG island CpG island 273
Tssr11767 1 57406446 to 57406507 61 - TSS region transcription start site region 11767
Maip1 1 57406548 to 57415958 9410 + protein coding gene matrix AAA peptidase interacting protein 1
Tssr6744 1 57406728 to 57406774 46 + TSS region transcription start site region 6744
Gm22371 1 57422244 to 57422373 129 - snoRNA gene predicted gene, 22371
Gm24014 1 57467870 to 57468026 156 + snRNA gene predicted gene, 24014
Gm8581 1 57518526 to 57519368 842 - pseudogene predicted gene 8581
Tssr11768 1 57519423 to 57519441 18 - TSS region transcription start site region 11768
Gm37373 1 57520831 to 57523642 2811 - unclassified gene predicted gene, 37373
D1Mit74 1 57550967 to 57551104 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 74
Gm17929 1 57561298 to 57561850 552 - pseudogene predicted gene, 17929
Tssr6745 1 57576696 to 57576697 1 + TSS region transcription start site region 6745
D1Mit124 1 57689117 to 57689261 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 124
Idd5.1 1 57689117 to 62907723 5218606 QTL insulin dependent diabetes susceptibility 5.1
Tssr6746 1 57732962 to 57732980 18 + TSS region transcription start site region 6746
Spats2l 1 57774162 to 57948394 174232 + protein coding gene spermatogenesis associated, serine-rich 2-like
Cpgi274 1 57774186 to 57775772 1586 CpG island CpG island 274
Tssr6747 1 57774748 to 57774762 14 + TSS region transcription start site region 6747
Tssr6748 1 57774842 to 57774932 90 + TSS region transcription start site region 6748
Tssr6749 1 57774933 to 57774955 22 + TSS region transcription start site region 6749
Tssr6750 1 57777069 to 57777072 3 + TSS region transcription start site region 6750
Tssr6751 1 57845534 to 57845553 19 + TSS region transcription start site region 6751
Tssr6752 1 57845593 to 57845617 24 + TSS region transcription start site region 6752
Tssr6753 1 57901943 to 57901977 34 + TSS region transcription start site region 6753
Gm17234 1 57909835 to 57917111 7276 - antisense lncRNA gene predicted gene 17234
Kctd18 1 57955101 to 57970084 14983 - protein coding gene potassium channel tetramerisation domain containing 18
Cpgi275 1 57969406 to 57970361 955 CpG island CpG island 275
Tssr11769 1 57970008 to 57970022 14 - TSS region transcription start site region 11769
Tssr11770 1 57970032 to 57970065 33 - TSS region transcription start site region 11770
Tssr11771 1 57970067 to 57970094 27 - TSS region transcription start site region 11771
Tssr11772 1 57970104 to 57970118 14 - TSS region transcription start site region 11772
Cpgi276 1 57995724 to 57996410 686 CpG island CpG island 276
Sgo2a 1 57995971 to 58025899 29928 + protein coding gene shugoshin 2A
Tssr6754 1 57995980 to 57996059 79 + TSS region transcription start site region 6754
Tssr6755 1 57996061 to 57996072 11 + TSS region transcription start site region 6755
Aox1 1 58029931 to 58106413 76482 + protein coding gene aldehyde oxidase 1
Tssr6756 1 58029955 to 58029974 19 + TSS region transcription start site region 6756
Tssr6757 1 58029984 to 58029997 13 + TSS region transcription start site region 6757
Tssr11773 1 58045273 to 58045276 3 - TSS region transcription start site region 11773
Aox3 1 58113135 to 58200452 87317 + protein coding gene aldehyde oxidase 3
Tssr6758 1 58113166 to 58113184 18 + TSS region transcription start site region 6758
Tssr6759 1 58115351 to 58115394 43 + TSS region transcription start site region 6759
Gm39643 1 58115415 to 58140751 25336 - lncRNA gene predicted gene, 39643
Tssr6760 1 58115419 to 58115433 14 + TSS region transcription start site region 6760
Tssr6761 1 58122228 to 58122251 23 + TSS region transcription start site region 6761
Gm24548 1 58154981 to 58155088 107 - snoRNA gene predicted gene, 24548
D1Mit376 1 58166917 to 58167048 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 376
D1Mit376.1 1 58167050 to 58167162 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 376.1
D1Mit531 1 58180132 to 58180240 108 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 531
Tssr6762 1 58183498 to 58183499 1 + TSS region transcription start site region 6762
Aox4 1 58210397 to 58268597 58200 + protein coding gene aldehyde oxidase 4
Tssr6763 1 58210443 to 58210457 14 + TSS region transcription start site region 6763
Thypr2 1 58233965 to 58234112 147 QTL thymocyte proliferative response 2
Bswt 1 58233965 to 63884110 5650145 heritable phenotypic marker belly spot with white toes
D1Mit214 1 58233965 to 58234112 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 214
D1Mit5.2 1 58257371 to 58257546 175 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 5.2
Tssr6764 1 58278309 to 58278311 2 + TSS region transcription start site region 6764
Aox2 1 58278326 to 58379264 100938 + protein coding gene aldehyde oxidase 2
Gm15759 1 58289415 to 58315429 26014 - antisense lncRNA gene predicted gene 15759
Gm37607 1 58383512 to 58386134 2622 - unclassified gene predicted gene, 37607
Gm6860 1 58388767 to 58388990 223 - pseudogene predicted gene 6860
Tssr6765 1 58392592 to 58392598 6 + TSS region transcription start site region 6765
Cpgi277 1 58392628 to 58394003 1375 CpG island CpG island 277
Tssr11774 1 58392741 to 58392764 23 - TSS region transcription start site region 11774
Tssr6766 1 58392863 to 58392879 16 + TSS region transcription start site region 6766
Tssr6767 1 58392966 to 58392986 20 + TSS region transcription start site region 6767
Tssr11775 1 58393046 to 58393067 21 - TSS region transcription start site region 11775
Tssr6768 1 58393119 to 58393147 28 + TSS region transcription start site region 6768
Bzw1 1 58393136 to 58407354 14218 + protein coding gene basic leucine zipper and W2 domains 1
Tssr6769 1 58393193 to 58393241 48 + TSS region transcription start site region 6769
Tssr91 1 58393366 to 58393373 7 - TSS region transcription start site region 91
Tssr6770 1 58393471 to 58393482 11 + TSS region transcription start site region 6770
Tssr6771 1 58393483 to 58393496 13 + TSS region transcription start site region 6771
Tssr6772 1 58393501 to 58393522 21 + TSS region transcription start site region 6772
Tssr6773 1 58406527 to 58406536 9 + TSS region transcription start site region 6773
Tssr6774 1 58406799 to 58406824 25 + TSS region transcription start site region 6774
Tssr6775 1 58406838 to 58406875 37 + TSS region transcription start site region 6775
Clk1 1 58411988 to 58424088 12100 - protein coding gene CDC-like kinase 1
Tssr11776 1 58419995 to 58420006 11 - TSS region transcription start site region 11776
Tssr11777 1 58420315 to 58420331 16 - TSS region transcription start site region 11777
Tssr11778 1 58422844 to 58422849 5 - TSS region transcription start site region 11778
Cpgi278 1 58423327 to 58424273 946 CpG island CpG island 278
Tssr11779 1 58424007 to 58424028 21 - TSS region transcription start site region 11779
Tssr11780 1 58424042 to 58424064 22 - TSS region transcription start site region 11780
Ppil3 1 58430994 to 58445486 14492 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 3
Tssr6776 1 58431398 to 58431400 2 + TSS region transcription start site region 6776
Cpgi279 1 58445066 to 58445703 637 CpG island CpG island 279
Nif3l1 1 58445156 to 58462276 17120 + protein coding gene Ngg1 interacting factor 3-like 1 (S. pombe)
Tssr11781 1 58445161 to 58445202 41 - TSS region transcription start site region 11781
Tssr6777 1 58445259 to 58445307 48 + TSS region transcription start site region 6777
Tssr11782 1 58445406 to 58445491 85 - TSS region transcription start site region 11782
Tssr6778 1 58445510 to 58445528 18 + TSS region transcription start site region 6778
Tssr6779 1 58445531 to 58445618 87 + TSS region transcription start site region 6779
Tssr92 1 58449526 to 58449532 6 + TSS region transcription start site region 92
Orc2 1 58462771 to 58505109 42338 - protein coding gene origin recognition complex, subunit 2
Gm23966 1 58466515 to 58466621 106 - snRNA gene predicted gene, 23966
Cpgi280 1 58504434 to 58505244 810 CpG island CpG island 280
Tssr11783 1 58504919 to 58504942 23 - TSS region transcription start site region 11783
Tssr11784 1 58504946 to 58504965 19 - TSS region transcription start site region 11784
Tssr6780 1 58505135 to 58505162 27 + TSS region transcription start site region 6780
Gm15834 1 58505148 to 58523230 18082 + lincRNA gene predicted gene 15834
Fam126b 1 58522806 to 58586323 63517 - protein coding gene family with sequence similarity 126, member B
Tssr11785 1 58581973 to 58581978 5 - TSS region transcription start site region 11785
D1Mit324 1 58583625 to 58583862 237 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 324
Cpgi281 1 58585808 to 58586797 989 CpG island CpG island 281
Tssr11786 1 58586240 to 58586318 78 - TSS region transcription start site region 11786
Tssr6781 1 58586381 to 58586401 20 + TSS region transcription start site region 6781
Ndufb3 1 58586397 to 58595964 9567 + protein coding gene NADH:ubiquinone oxidoreductase subunit B3
Tssr6782 1 58586405 to 58586446 41 + TSS region transcription start site region 6782
Tssr6783 1 58586591 to 58586625 34 + TSS region transcription start site region 6783
Tssr93 1 58586628 to 58586641 13 + TSS region transcription start site region 93
Gm29389 1 58625214 to 58625565 351 - pseudogene predicted gene 29389
Gm18802 1 58636760 to 58637347 587 + pseudogene predicted gene, 18802
Cbx3-ps7 1 58646688 to 58647239 551 + pseudogene chromobox 3, pseudogene 7
Cpgi282 1 58652487 to 58652978 491 CpG island CpG island 282
Tssr6784 1 58652588 to 58652626 38 + TSS region transcription start site region 6784
Gm20257 1 58652641 to 58655831 3190 + pseudogene predicted gene, 20257
Flacc1 1 58656926 to 58696009 39083 - protein coding gene flagellum associated containing coiled-coil domains 1
D1Mit75a 1 58691390 to 58691579 189 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 75a
Tssr11787 1 58695944 to 58695964 20 - TSS region transcription start site region 11787
Gm28803 1 58702309 to 58703986 1677 + pseudogene predicted gene 28803
Cpgi283 1 58711382 to 58711934 552 CpG island CpG island 283
Tssr6785 1 58711462 to 58711473 11 + TSS region transcription start site region 6785
Tssr6786 1 58711488 to 58711523 35 + TSS region transcription start site region 6786
Cflar 1 58711508 to 58758884 47376 + protein coding gene CASP8 and FADD-like apoptosis regulator
Tssr6787 1 58712061 to 58712089 28 + TSS region transcription start site region 6787
Tssr11788 1 58712222 to 58712245 23 - TSS region transcription start site region 11788
Tssr6788 1 58712396 to 58712434 38 + TSS region transcription start site region 6788
Tssr6789 1 58713204 to 58713217 13 + TSS region transcription start site region 6789
Tssr6790 1 58713241 to 58713314 73 + TSS region transcription start site region 6790
Cpgi284 1 58713302 to 58713671 369 CpG island CpG island 284
Tssr6791 1 58713320 to 58713332 12 + TSS region transcription start site region 6791
Tssr6792 1 58713378 to 58713381 3 + TSS region transcription start site region 6792
Tssr6793 1 58713446 to 58713457 11 + TSS region transcription start site region 6793
Tssr6794 1 58714164 to 58714200 36 + TSS region transcription start site region 6794
Tssr6795 1 58714316 to 58714323 7 + TSS region transcription start site region 6795
Tssr6796 1 58714644 to 58714657 13 + TSS region transcription start site region 6796
Tssr6797 1 58716842 to 58716845 3 + TSS region transcription start site region 6797
Tssr6798 1 58717450 to 58717469 19 + TSS region transcription start site region 6798
Tssr11789 1 58721102 to 58721114 12 - TSS region transcription start site region 11789
Tssr6799 1 58722729 to 58722747 18 + TSS region transcription start site region 6799