Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:55011264-55122069

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sf3b1 1 54985169 to 55027481 42312 - protein coding gene splicing factor 3b, subunit 1
Tssr11705 1 55019326 to 55019344 18 - TSS region transcription start site region 11705
Tssr11706 1 55022090 to 55022095 5 - TSS region transcription start site region 11706
Tssr11707 1 55023816 to 55023820 4 - TSS region transcription start site region 11707
Tssr6707 1 55026349 to 55026376 27 + TSS region transcription start site region 6707
Cpgi259 1 55026820 to 55027745 925 CpG island CpG island 259
Tssr11708 1 55027377 to 55027406 29 - TSS region transcription start site region 11708
Tssr11709 1 55027473 to 55027484 11 - TSS region transcription start site region 11709
Tssr6708 1 55027597 to 55027600 3 + TSS region transcription start site region 6708
Tssr6709 1 55034090 to 55034095 5 + TSS region transcription start site region 6709
E330011M16Rik 1 55051319 to 55053112 1793 - unclassified gene RIKEN cDNA E330011M16 gene
Tssr87 1 55052282 to 55052293 11 + TSS region transcription start site region 87
Cpgi260 1 55052284 to 55053450 1166 CpG island CpG island 260
Tssr11710 1 55052598 to 55052622 24 - TSS region transcription start site region 11710
Tssr6710 1 55052763 to 55052777 14 + TSS region transcription start site region 6710
Coq10b 1 55052770 to 55072702 19932 + protein coding gene coenzyme Q10B
Tssr6711 1 55052831 to 55052882 51 + TSS region transcription start site region 6711
Gm17971 1 55066264 to 55067069 805 + pseudogene predicted gene, 17971
Hspd1 1 55077834 to 55088217 10383 - protein coding gene heat shock protein 1 (chaperonin)
Cpgi261 1 55087067 to 55088740 1673 CpG island CpG island 261
Tssr11711 1 55087825 to 55087885 60 - TSS region transcription start site region 11711
Tssr6712 1 55087951 to 55087994 43 + TSS region transcription start site region 6712
Tssr11712 1 55088030 to 55088102 72 - TSS region transcription start site region 11712
Tssr11713 1 55088103 to 55088117 14 - TSS region transcription start site region 11713
Hspe1 1 55088148 to 55091317 3169 + protein coding gene heat shock protein 1 (chaperonin 10)
Tssr11714 1 55088156 to 55088180 24 - TSS region transcription start site region 11714
Tssr6713 1 55088306 to 55088352 46 + TSS region transcription start site region 6713
Gm5147 1 55120080 to 55120873 793 - pseudogene predicted gene 5147