Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:55002770-55122702

32 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Sf3b1	1	54985169 to 55027481	42312	-	protein coding gene	splicing factor 3b, subunit 1
Tssr11703	1	55003478 to 55003497	19	-	TSS region	transcription start site region 11703
D1Dcr38	1	55006848 to 55006943	95		DNA segment	DNA Segment, Chr 1, Derry C. Roopenian 38
A430105D02Rik	1	55009204 to 55010357	1153		unclassified gene	RIKEN cDNA A430105D02 gene
Tssr11704	1	55010335 to 55010336	1	-	TSS region	transcription start site region 11704
Tssr11705	1	55019326 to 55019344	18	-	TSS region	transcription start site region 11705
Tssr11706	1	55022090 to 55022095	5	-	TSS region	transcription start site region 11706
Tssr11707	1	55023816 to 55023820	4	-	TSS region	transcription start site region 11707
Tssr6707	1	55026349 to 55026376	27	+	TSS region	transcription start site region 6707
Cpgi259	1	55026820 to 55027745	925		CpG island	CpG island 259
Tssr11708	1	55027377 to 55027406	29	-	TSS region	transcription start site region 11708
Tssr11709	1	55027473 to 55027484	11	-	TSS region	transcription start site region 11709
Tssr6708	1	55027597 to 55027600	3	+	TSS region	transcription start site region 6708
Tssr6709	1	55034090 to 55034095	5	+	TSS region	transcription start site region 6709
E330011M16Rik	1	55051319 to 55053112	1793	-	unclassified gene	RIKEN cDNA E330011M16 gene
Tssr87	1	55052282 to 55052293	11	+	TSS region	transcription start site region 87
Cpgi260	1	55052284 to 55053450	1166		CpG island	CpG island 260
Tssr11710	1	55052598 to 55052622	24	-	TSS region	transcription start site region 11710
Tssr6710	1	55052763 to 55052777	14	+	TSS region	transcription start site region 6710
Coq10b	1	55052770 to 55072702	19932	+	protein coding gene	coenzyme Q10B
Tssr6711	1	55052831 to 55052882	51	+	TSS region	transcription start site region 6711
Gm17971	1	55066264 to 55067069	805	+	pseudogene	predicted gene, 17971
Hspd1	1	55077834 to 55088217	10383	-	protein coding gene	heat shock protein 1 (chaperonin)
Cpgi261	1	55087067 to 55088740	1673		CpG island	CpG island 261
Tssr11711	1	55087825 to 55087885	60	-	TSS region	transcription start site region 11711
Tssr6712	1	55087951 to 55087994	43	+	TSS region	transcription start site region 6712
Tssr11712	1	55088030 to 55088102	72	-	TSS region	transcription start site region 11712
Tssr11713	1	55088103 to 55088117	14	-	TSS region	transcription start site region 11713
Hspe1	1	55088148 to 55091317	3169	+	protein coding gene	heat shock protein 1 (chaperonin 10)
Tssr11714	1	55088156 to 55088180	24	-	TSS region	transcription start site region 11714
Tssr6713	1	55088306 to 55088352	46	+	TSS region	transcription start site region 6713
Gm5147	1	55120080 to 55120873	793	-	pseudogene	predicted gene 5147