Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:54922618-63042623

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826 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hbnr1 1 25511110 to 58234112 32723002 QTL Heligmosomoides bakeri nematode resistance 1
Col4a1m1 1 25511110 to 62907723 37396613 QTL collagen, type IV, alpha 1 modifier 1
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Ankrd44 1 54645340 to 54926387 281047 - protein coding gene ankyrin repeat domain 44
Cpgi258 1 54925497 to 54926847 1350 CpG island CpG island 258
Tssr6706 1 54926155 to 54926191 36 + TSS region transcription start site region 6706
Tssr11698 1 54926293 to 54926304 11 - TSS region transcription start site region 11698
Tssr11699 1 54926311 to 54926402 91 - TSS region transcription start site region 11699
Tssr11700 1 54926408 to 54926415 7 - TSS region transcription start site region 11700
Sf3b1 1 54985169 to 55027481 42312 - protein coding gene splicing factor 3b, subunit 1
Tssr11701 1 55000118 to 55000144 26 - TSS region transcription start site region 11701
Tssr11702 1 55001107 to 55001110 3 - TSS region transcription start site region 11702
Tssr11703 1 55003478 to 55003497 19 - TSS region transcription start site region 11703
D1Dcr38 1 55006848 to 55006943 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 38
A430105D02Rik 1 55009204 to 55010357 1153 unclassified gene RIKEN cDNA A430105D02 gene
Tssr11704 1 55010335 to 55010336 1 - TSS region transcription start site region 11704
Tssr11705 1 55019326 to 55019344 18 - TSS region transcription start site region 11705
Tssr11706 1 55022090 to 55022095 5 - TSS region transcription start site region 11706
Tssr11707 1 55023816 to 55023820 4 - TSS region transcription start site region 11707
Tssr6707 1 55026349 to 55026376 27 + TSS region transcription start site region 6707
Cpgi259 1 55026820 to 55027745 925 CpG island CpG island 259
Tssr11708 1 55027377 to 55027406 29 - TSS region transcription start site region 11708
Tssr11709 1 55027473 to 55027484 11 - TSS region transcription start site region 11709
Tssr6708 1 55027597 to 55027600 3 + TSS region transcription start site region 6708
Tssr6709 1 55034090 to 55034095 5 + TSS region transcription start site region 6709
E330011M16Rik 1 55051319 to 55053112 1793 - unclassified gene RIKEN cDNA E330011M16 gene
Tssr87 1 55052282 to 55052293 11 + TSS region transcription start site region 87
Cpgi260 1 55052284 to 55053450 1166 CpG island CpG island 260
Tssr11710 1 55052598 to 55052622 24 - TSS region transcription start site region 11710
Tssr6710 1 55052763 to 55052777 14 + TSS region transcription start site region 6710
Coq10b 1 55052770 to 55072702 19932 + protein coding gene coenzyme Q10B
Tssr6711 1 55052831 to 55052882 51 + TSS region transcription start site region 6711
Gm17971 1 55066264 to 55067069 805 + pseudogene predicted gene, 17971
Hspd1 1 55077834 to 55088217 10383 - protein coding gene heat shock protein 1 (chaperonin)
Cpgi261 1 55087067 to 55088740 1673 CpG island CpG island 261
Tssr11711 1 55087825 to 55087885 60 - TSS region transcription start site region 11711
Tssr6712 1 55087951 to 55087994 43 + TSS region transcription start site region 6712
Tssr11712 1 55088030 to 55088102 72 - TSS region transcription start site region 11712
Tssr11713 1 55088103 to 55088117 14 - TSS region transcription start site region 11713
Hspe1 1 55088148 to 55091317 3169 + protein coding gene heat shock protein 1 (chaperonin 10)
Tssr11714 1 55088156 to 55088180 24 - TSS region transcription start site region 11714
Tssr6713 1 55088306 to 55088352 46 + TSS region transcription start site region 6713
Gm5147 1 55120080 to 55120873 793 - pseudogene predicted gene 5147
Gm16581 1 55127297 to 55128287 990 + pseudogene predicted gene 16581
Cpgi262 1 55130974 to 55131955 981 CpG island CpG island 262
Tssr11715 1 55131038 to 55131053 15 - TSS region transcription start site region 11715
Tssr6714 1 55131095 to 55131108 13 + TSS region transcription start site region 6714
Tssr6715 1 55131237 to 55131249 12 + TSS region transcription start site region 6715
Mob4 1 55131245 to 55154899 23654 + protein coding gene MOB family member 4, phocein
Tssr6716 1 55131253 to 55131302 49 + TSS region transcription start site region 6716
Tssr6717 1 55131317 to 55131331 14 + TSS region transcription start site region 6717
Tssr11716 1 55131623 to 55131654 31 - TSS region transcription start site region 11716
Tssr6718 1 55147628 to 55147633 5 + TSS region transcription start site region 6718
Gm6822 1 55160747 to 55161053 306 - pseudogene predicted pseudogene 6822
Rftn2 1 55170159 to 55226782 56623 - protein coding gene raftlin family member 2
Tssr6719 1 55204903 to 55204912 9 + TSS region transcription start site region 6719
Tssr11717 1 55215530 to 55215574 44 - TSS region transcription start site region 11717
Tssr11718 1 55226460 to 55226521 61 - TSS region transcription start site region 11718
Tssr11719 1 55226522 to 55226541 19 - TSS region transcription start site region 11719
Tssr6720 1 55226611 to 55226622 11 + TSS region transcription start site region 6720
Gm10561 1 55226661 to 55235534 8873 + antisense lncRNA gene predicted gene 10561
Tssr11720 1 55226742 to 55226764 22 - TSS region transcription start site region 11720
Tssr11721 1 55226768 to 55226813 45 - TSS region transcription start site region 11721
Cpgi263 1 55236911 to 55238367 1456 CpG island CpG island 263
Tssr11722 1 55237037 to 55237045 8 - TSS region transcription start site region 11722
Mars2 1 55237177 to 55240058 2881 + protein coding gene methionine-tRNA synthetase 2 (mitochondrial)
Tssr6721 1 55237191 to 55237255 64 + TSS region transcription start site region 6721
Boll 1 55248658 to 55363469 114811 - protein coding gene boule homolog, RNA binding protein
Tssr11723 1 55248678 to 55248683 5 - TSS region transcription start site region 11723
Gm8292 1 55335401 to 55335796 395 + pseudogene predicted gene 8292
Tssr88 1 55335891 to 55335895 4 - TSS region transcription start site region 88
Cpgi264 1 55362311 to 55363988 1677 CpG island CpG island 264
Tssr11724 1 55362677 to 55362687 10 - TSS region transcription start site region 11724
Tssr11725 1 55362692 to 55362749 57 - TSS region transcription start site region 11725
Tssr11726 1 55362785 to 55362786 1 - TSS region transcription start site region 11726
Tssr11727 1 55363340 to 55363364 24 - TSS region transcription start site region 11727
Tssr11728 1 55363387 to 55363396 9 - TSS region transcription start site region 11728
Tssr11729 1 55363432 to 55363443 11 - TSS region transcription start site region 11729
Tssr11730 1 55363462 to 55363475 13 - TSS region transcription start site region 11730
Tssr11731 1 55363734 to 55363756 22 - TSS region transcription start site region 11731
Gm29138 1 55370013 to 55370327 314 - pseudogene predicted gene 29138
Gm8531 1 55381195 to 55382087 892 - pseudogene predicted gene 8531
Cpgi265 1 55381773 to 55382146 373 CpG island CpG island 265
Gm46092 1 55404264 to 55405956 1692 - lncRNA gene predicted gene, 46092
Cpgi266 1 55405441 to 55406994 1553 CpG island CpG island 266
Tssr6722 1 55405881 to 55405967 86 + TSS region transcription start site region 6722
Plcl1 1 55405946 to 55754285 348339 + protein coding gene phospholipase C-like 1
Tssr6723 1 55405996 to 55406007 11 + TSS region transcription start site region 6723
Tssr6724 1 55406163 to 55406243 80 + TSS region transcription start site region 6724
D1Dcr39 1 55409553 to 55409656 103 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 39
Tssr89 1 55412212 to 55412213 1 + TSS region transcription start site region 89
C230085J04Rik 1 55425050 to 55426951 1901 unclassified gene RIKEN cDNA C230085J04 gene
Gm38056 1 55440904 to 55445930 5026 + unclassified gene predicted gene, 38056
Gm6644 1 55444074 to 55445024 950 - pseudogene predicted gene 6644
Tssr6725 1 55450098 to 55450111 13 + TSS region transcription start site region 6725
Tssr6726 1 55450188 to 55450220 32 + TSS region transcription start site region 6726
Tssr6727 1 55450299 to 55450389 90 + TSS region transcription start site region 6727
Tssr6728 1 55456720 to 55456737 17 + TSS region transcription start site region 6728
Gm39642 1 55502042 to 55506499 4457 - lncRNA gene predicted gene, 39642
Gm37382 1 55559460 to 55561055 1595 + unclassified gene predicted gene, 37382
Tssr6729 1 55606065 to 55606069 4 + TSS region transcription start site region 6729
Tssr11732 1 55764643 to 55764646 3 - TSS region transcription start site region 11732
Tssr6730 1 55796376 to 55796425 49 + TSS region transcription start site region 6730
Gm32949 1 55888972 to 55917219 28247 + lncRNA gene predicted gene, 32949
Tssr6731 1 55892069 to 55892107 38 + TSS region transcription start site region 6731
9130227L01Rik 1 55931241 to 55972098 40857 + lincRNA gene RIKEN cDNA 9130227L01 gene
Gm36986 1 55960404 to 55960756 352 - unclassified gene predicted gene, 36986
Tssr6732 1 56018954 to 56018993 39 + TSS region transcription start site region 6732
1700003I22Rik 1 56018978 to 56020203 1225 + lincRNA gene RIKEN cDNA 1700003I22 gene
Tssr6733 1 56019874 to 56019879 5 + TSS region transcription start site region 6733
Tssr6734 1 56087016 to 56087029 13 + TSS region transcription start site region 6734
D1Mit529 1 56184815 to 56185005 190 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 529
Tssr6735 1 56451363 to 56451373 10 + TSS region transcription start site region 6735
Gm28900 1 56451407 to 56451562 155 + pseudogene predicted gene 28900
Gm28240 1 56531824 to 56533876 2052 + lincRNA gene predicted gene 28240
Hsfy2 1 56636044 to 56637435 1391 - protein coding gene heat shock transcription factor, Y-linked 2
Tssr11733 1 56637408 to 56637415 7 - TSS region transcription start site region 11733
Tssr11734 1 56637425 to 56637429 4 - TSS region transcription start site region 11734
Tssr11735 1 56637430 to 56637449 19 - TSS region transcription start site region 11735
Tssr11736 1 56637455 to 56637460 5 - TSS region transcription start site region 11736
Tssr11737 1 56637461 to 56637480 19 - TSS region transcription start site region 11737
D1Mit530 1 56673681 to 56673795 114 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 530
Tssr11738 1 56782165 to 56782210 45 - TSS region transcription start site region 11738
Tssr11739 1 56782216 to 56782225 9 - TSS region transcription start site region 11739
Tssr11740 1 56782391 to 56782399 8 - TSS region transcription start site region 11740
Satb2 1 56793981 to 56978650 184669 - protein coding gene special AT-rich sequence binding protein 2
Tssr11741 1 56796169 to 56796180 11 - TSS region transcription start site region 11741
Tssr90 1 56869108 to 56869113 5 - TSS region transcription start site region 90
Tssr11742 1 56871360 to 56871364 4 - TSS region transcription start site region 11742
Tssr11743 1 56871687 to 56871691 4 - TSS region transcription start site region 11743
Tssr11744 1 56899090 to 56899100 10 - TSS region transcription start site region 11744
Cpgi267 1 56969505 to 56970001 496 CpG island CpG island 267
Tssr11745 1 56969827 to 56969850 23 - TSS region transcription start site region 11745
Tssr11746 1 56969864 to 56969875 11 - TSS region transcription start site region 11746
Cpgi268 1 56970829 to 56971217 388 CpG island CpG island 268
Tssr11747 1 56971267 to 56971278 11 - TSS region transcription start site region 11747
Tssr11748 1 56971281 to 56971305 24 - TSS region transcription start site region 11748
Tssr11749 1 56971313 to 56971329 16 - TSS region transcription start site region 11749
Tssr11750 1 56971338 to 56971347 9 - TSS region transcription start site region 11750
Tssr6736 1 56971451 to 56971505 54 + TSS region transcription start site region 6736
Cpgi269 1 56971462 to 56973701 2239 CpG island CpG island 269
9130024F11Rik 1 56971469 to 56975196 3727 + lncRNA gene RIKEN cDNA 9130024F11 gene
Tssr11751 1 56971694 to 56971709 15 - TSS region transcription start site region 11751
Tssr11752 1 56971712 to 56971739 27 - TSS region transcription start site region 11752
Tssr11753 1 56971750 to 56971760 10 - TSS region transcription start site region 11753
Tssr11754 1 56971762 to 56971781 19 - TSS region transcription start site region 11754
Tssr6737 1 56972033 to 56972044 11 + TSS region transcription start site region 6737
Tssr6738 1 56972180 to 56972206 26 + TSS region transcription start site region 6738
Tssr11755 1 56972183 to 56972212 29 - TSS region transcription start site region 11755
Tssr11756 1 56972232 to 56972254 22 - TSS region transcription start site region 11756
Tssr11757 1 56972437 to 56972482 45 - TSS region transcription start site region 11757
Tssr6739 1 56972555 to 56972589 34 + TSS region transcription start site region 6739
Tssr6740 1 56974032 to 56974036 4 + TSS region transcription start site region 6740
Tssr11758 1 56974500 to 56974520 20 - TSS region transcription start site region 11758
Cpgi270 1 56976635 to 56978020 1385 CpG island CpG island 270
Gm4081 1 56976803 to 56978640 1837 + unclassified gene predicted gene 4081
Tssr11759 1 56978494 to 56978511 17 - TSS region transcription start site region 11759
Tssr11760 1 56978512 to 56978524 12 - TSS region transcription start site region 11760
Tssr11761 1 56978534 to 56978544 10 - TSS region transcription start site region 11761
Tssr11762 1 56981118 to 56981127 9 - TSS region transcription start site region 11762
Cpgi271 1 56984329 to 56984740 411 CpG island CpG island 271
Gm23943 1 56999155 to 56999275 120 - miRNA gene predicted gene, 23943
D1Mit377 1 57000792 to 57000954 162 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 377
Gm38484 1 57002504 to 57042519 40015 + lncRNA gene predicted gene, 38484
Tssr11763 1 57098885 to 57098896 11 - TSS region transcription start site region 11763
Tssr6741 1 57127305 to 57127340 35 + TSS region transcription start site region 6741
1700126A01Rik 1 57127340 to 57129400 2060 + lincRNA gene RIKEN cDNA 1700126A01 gene
Tssr6742 1 57154587 to 57154588 1 + TSS region transcription start site region 6742
BC055402 1 57200645 to 57214993 14348 - lincRNA gene cDNA sequence BC055402
Gm5254 1 57291425 to 57292401 976 - pseudogene predicted gene 5254
4930558J18Rik 1 57359222 to 57377544 18322 - lincRNA gene RIKEN cDNA 4930558J18 gene
Cpgi272 1 57377366 to 57378266 900 CpG island CpG island 272
Tssr11764 1 57377476 to 57377539 63 - TSS region transcription start site region 11764
Tssr6743 1 57377593 to 57377689 96 + TSS region transcription start site region 6743
1700066M21Rik 1 57377620 to 57385423 7803 + protein coding gene RIKEN cDNA 1700066M21 gene
Tyw5 1 57388235 to 57406674 18439 - protein coding gene tRNA-yW synthesizing protein 5
Tssr11765 1 57391481 to 57391491 10 - TSS region transcription start site region 11765
Tssr11766 1 57396693 to 57396697 4 - TSS region transcription start site region 11766
Cpgi273 1 57406106 to 57407299 1193 CpG island CpG island 273
Tssr11767 1 57406446 to 57406507 61 - TSS region transcription start site region 11767
Maip1 1 57406548 to 57415958 9410 + protein coding gene matrix AAA peptidase interacting protein 1
Tssr6744 1 57406728 to 57406774 46 + TSS region transcription start site region 6744
Gm22371 1 57422244 to 57422373 129 - snoRNA gene predicted gene, 22371
Gm24014 1 57467870 to 57468026 156 + snRNA gene predicted gene, 24014
Gm8581 1 57518526 to 57519368 842 - pseudogene predicted gene 8581
Tssr11768 1 57519423 to 57519441 18 - TSS region transcription start site region 11768
Gm37373 1 57520831 to 57523642 2811 - unclassified gene predicted gene, 37373
D1Mit74 1 57550967 to 57551104 137 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 74
Gm17929 1 57561298 to 57561850 552 - pseudogene predicted gene, 17929
Tssr6745 1 57576696 to 57576697 1 + TSS region transcription start site region 6745
D1Mit124 1 57689117 to 57689261 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 124
Idd5.1 1 57689117 to 62907723 5218606 QTL insulin dependent diabetes susceptibility 5.1
Tssr6746 1 57732962 to 57732980 18 + TSS region transcription start site region 6746
Spats2l 1 57774162 to 57948394 174232 + protein coding gene spermatogenesis associated, serine-rich 2-like
Cpgi274 1 57774186 to 57775772 1586 CpG island CpG island 274
Tssr6747 1 57774748 to 57774762 14 + TSS region transcription start site region 6747
Tssr6748 1 57774842 to 57774932 90 + TSS region transcription start site region 6748
Tssr6749 1 57774933 to 57774955 22 + TSS region transcription start site region 6749
Tssr6750 1 57777069 to 57777072 3 + TSS region transcription start site region 6750
Tssr6751 1 57845534 to 57845553 19 + TSS region transcription start site region 6751