Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:5463707-6367398

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D1Mit474 1 5579697 to 5579843 146 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 474
Oprk1 1 5588466 to 5606131 17665 + protein coding gene opioid receptor, kappa 1
Gm36965 1 5617837 to 5618230 393 - pseudogene predicted gene, 36965
Tssr10902 1 5618200 to 5618211 11 - TSS region transcription start site region 10902
Gm22463 1 5644645 to 5644745 100 - miRNA gene predicted gene, 22463
Gm37429 1 5842874 to 5844672 1798 - unclassified gene predicted gene, 37429
Alpq4 1 5906465 to 5906465 0 QTL alcohol preference QTL 4
Npbwr1 1 5913707 to 5917398 3691 - protein coding gene neuropeptides B/W receptor 1
Cpgi15 1 5916286 to 5917516 1230 CpG island CpG island 15
Gm19214 1 6048972 to 6050045 1073 - pseudogene predicted gene, 19214
Gm46206 1 6164706 to 6167315 2609 - lncRNA gene predicted gene, 46206
4732440D04Rik 1 6209866 to 6215293 5427 - antisense lncRNA gene RIKEN cDNA 4732440D04 gene
Cpgi16 1 6214130 to 6215591 1461 CpG island CpG island 16
Tssr10903 1 6214436 to 6214447 11 - TSS region transcription start site region 10903
Tssr10904 1 6214515 to 6214534 19 - TSS region transcription start site region 10904
Tssr10905 1 6214539 to 6214572 33 - TSS region transcription start site region 10905
Tssr10906 1 6214574 to 6214605 31 - TSS region transcription start site region 10906
Tssr5820 1 6214627 to 6214683 56 + TSS region transcription start site region 5820
Rb1cc1 1 6214662 to 6276374 61712 + protein coding gene RB1-inducible coiled-coil 1
Tssr5821 1 6214684 to 6214722 38 + TSS region transcription start site region 5821
Tssr5822 1 6214787 to 6214801 14 + TSS region transcription start site region 5822
Tssr5823 1 6214806 to 6214817 11 + TSS region transcription start site region 5823
Tssr5824 1 6214828 to 6214838 10 + TSS region transcription start site region 5824
Tssr5825 1 6214857 to 6214866 9 + TSS region transcription start site region 5825
Tssr5826 1 6222703 to 6222707 4 + TSS region transcription start site region 5826
Tssr5827 1 6249311 to 6249329 18 + TSS region transcription start site region 5827
Tssr5828 1 6249702 to 6249714 12 + TSS region transcription start site region 5828
Tssr5829 1 6267083 to 6267088 5 + TSS region transcription start site region 5829
Tssr2 1 6324643 to 6324646 3 + TSS region transcription start site region 2
Cpgi17 1 6359030 to 6359537 507 CpG island CpG island 17
Alkal1 1 6359331 to 6394731 35400 + protein coding gene ALK and LTK ligand 1