Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:54396703-54737281

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23 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf3c3 1 54396004 to 54438971 42967 - protein coding gene general transcription factor IIIC, polypeptide 3
Tssr11685 1 54396945 to 54396951 6 - TSS region transcription start site region 11685
Cpgi256 1 54438751 to 54439143 392 CpG island CpG island 256
Tssr11686 1 54438940 to 54438994 54 - TSS region transcription start site region 11686
Tssr11687 1 54439003 to 54439014 11 - TSS region transcription start site region 11687
Gm34066 1 54442697 to 54447094 4397 - lincRNA gene predicted gene, 34066
Pgap1 1 54473000 to 54557684 84684 - protein coding gene post-GPI attachment to proteins 1
Tssr11688 1 54483166 to 54483171 5 - TSS region transcription start site region 11688
Tssr11689 1 54484818 to 54484842 24 - TSS region transcription start site region 11689
Gm36955 1 54518610 to 54520270 1660 - unclassified gene predicted gene, 36955
Cpgi257 1 54557174 to 54558112 938 CpG island CpG island 257
Tssr11690 1 54557595 to 54557698 103 - TSS region transcription start site region 11690
Gm19637 1 54566703 to 54567281 578 + pseudogene predicted gene, 19637
Tssr86 1 54583871 to 54583880 9 + TSS region transcription start site region 86
Tssr11691 1 54585190 to 54585214 24 - TSS region transcription start site region 11691
Tssr11692 1 54585451 to 54585463 12 - TSS region transcription start site region 11692
Tssr6704 1 54585733 to 54585765 32 + TSS region transcription start site region 6704
Ankrd44 1 54645340 to 54926387 281047 - protein coding gene ankyrin repeat domain 44
4930444A19Rik 1 54681198 to 54766354 85156 + antisense lncRNA gene RIKEN cDNA 4930444A19 gene
Tssr6705 1 54681760 to 54681770 10 + TSS region transcription start site region 6705
Tssr11693 1 54716862 to 54716868 6 - TSS region transcription start site region 11693
Tssr11694 1 54732715 to 54732719 4 - TSS region transcription start site region 11694
Gm37370 1 54737166 to 54738575 1409 - unclassified gene predicted gene, 37370