Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:54375340-55196387

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf3c3 1 54396004 to 54438971 42967 - protein coding gene general transcription factor IIIC, polypeptide 3
Tssr11685 1 54396945 to 54396951 6 - TSS region transcription start site region 11685
Cpgi256 1 54438751 to 54439143 392 CpG island CpG island 256
Tssr11686 1 54438940 to 54438994 54 - TSS region transcription start site region 11686
Tssr11687 1 54439003 to 54439014 11 - TSS region transcription start site region 11687
Gm34066 1 54442697 to 54447094 4397 - lincRNA gene predicted gene, 34066
Pgap1 1 54473000 to 54557684 84684 - protein coding gene post-GPI attachment to proteins 1
Tssr11688 1 54483166 to 54483171 5 - TSS region transcription start site region 11688
Tssr11689 1 54484818 to 54484842 24 - TSS region transcription start site region 11689
Gm36955 1 54518610 to 54520270 1660 - unclassified gene predicted gene, 36955
Cpgi257 1 54557174 to 54558112 938 CpG island CpG island 257
Tssr11690 1 54557595 to 54557698 103 - TSS region transcription start site region 11690
Gm19637 1 54566703 to 54567281 578 + pseudogene predicted gene, 19637
Tssr86 1 54583871 to 54583880 9 + TSS region transcription start site region 86
Tssr11691 1 54585190 to 54585214 24 - TSS region transcription start site region 11691
Tssr11692 1 54585451 to 54585463 12 - TSS region transcription start site region 11692
Tssr6704 1 54585733 to 54585765 32 + TSS region transcription start site region 6704
Ankrd44 1 54645340 to 54926387 281047 - protein coding gene ankyrin repeat domain 44
4930444A19Rik 1 54681198 to 54766354 85156 + antisense lncRNA gene RIKEN cDNA 4930444A19 gene
Tssr6705 1 54681760 to 54681770 10 + TSS region transcription start site region 6705
Tssr11693 1 54716862 to 54716868 6 - TSS region transcription start site region 11693
Tssr11694 1 54732715 to 54732719 4 - TSS region transcription start site region 11694
Gm37370 1 54737166 to 54738575 1409 - unclassified gene predicted gene, 37370
Gm24053 1 54769218 to 54769322 104 + miRNA gene predicted gene, 24053
Tssr11695 1 54809964 to 54810001 37 - TSS region transcription start site region 11695
Tssr11696 1 54907164 to 54907175 11 - TSS region transcription start site region 11696
A130048G24Rik 1 54913845 to 54916594 2749 - unclassified gene RIKEN cDNA A130048G24 gene
Tssr11697 1 54914241 to 54914249 8 - TSS region transcription start site region 11697
Cpgi258 1 54925497 to 54926847 1350 CpG island CpG island 258
Tssr6706 1 54926155 to 54926191 36 + TSS region transcription start site region 6706
Tssr11698 1 54926293 to 54926304 11 - TSS region transcription start site region 11698
Tssr11699 1 54926311 to 54926402 91 - TSS region transcription start site region 11699
Tssr11700 1 54926408 to 54926415 7 - TSS region transcription start site region 11700
Sf3b1 1 54985169 to 55027481 42312 - protein coding gene splicing factor 3b, subunit 1
Tssr11701 1 55000118 to 55000144 26 - TSS region transcription start site region 11701
Tssr11702 1 55001107 to 55001110 3 - TSS region transcription start site region 11702
Tssr11703 1 55003478 to 55003497 19 - TSS region transcription start site region 11703
D1Dcr38 1 55006848 to 55006943 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 38
A430105D02Rik 1 55009204 to 55010357 1153 unclassified gene RIKEN cDNA A430105D02 gene
Tssr11704 1 55010335 to 55010336 1 - TSS region transcription start site region 11704
Tssr11705 1 55019326 to 55019344 18 - TSS region transcription start site region 11705
Tssr11706 1 55022090 to 55022095 5 - TSS region transcription start site region 11706
Tssr11707 1 55023816 to 55023820 4 - TSS region transcription start site region 11707
Tssr6707 1 55026349 to 55026376 27 + TSS region transcription start site region 6707
Cpgi259 1 55026820 to 55027745 925 CpG island CpG island 259
Tssr11708 1 55027377 to 55027406 29 - TSS region transcription start site region 11708
Tssr11709 1 55027473 to 55027484 11 - TSS region transcription start site region 11709
Tssr6708 1 55027597 to 55027600 3 + TSS region transcription start site region 6708
Tssr6709 1 55034090 to 55034095 5 + TSS region transcription start site region 6709
E330011M16Rik 1 55051319 to 55053112 1793 - unclassified gene RIKEN cDNA E330011M16 gene
Tssr87 1 55052282 to 55052293 11 + TSS region transcription start site region 87
Cpgi260 1 55052284 to 55053450 1166 CpG island CpG island 260
Tssr11710 1 55052598 to 55052622 24 - TSS region transcription start site region 11710
Tssr6710 1 55052763 to 55052777 14 + TSS region transcription start site region 6710
Coq10b 1 55052770 to 55072702 19932 + protein coding gene coenzyme Q10B
Tssr6711 1 55052831 to 55052882 51 + TSS region transcription start site region 6711
Gm17971 1 55066264 to 55067069 805 + pseudogene predicted gene, 17971
Hspd1 1 55077834 to 55088217 10383 - protein coding gene heat shock protein 1 (chaperonin)
Cpgi261 1 55087067 to 55088740 1673 CpG island CpG island 261
Tssr11711 1 55087825 to 55087885 60 - TSS region transcription start site region 11711
Tssr6712 1 55087951 to 55087994 43 + TSS region transcription start site region 6712
Tssr11712 1 55088030 to 55088102 72 - TSS region transcription start site region 11712
Tssr11713 1 55088103 to 55088117 14 - TSS region transcription start site region 11713
Hspe1 1 55088148 to 55091317 3169 + protein coding gene heat shock protein 1 (chaperonin 10)
Tssr11714 1 55088156 to 55088180 24 - TSS region transcription start site region 11714
Tssr6713 1 55088306 to 55088352 46 + TSS region transcription start site region 6713
Gm5147 1 55120080 to 55120873 793 - pseudogene predicted gene 5147
Gm16581 1 55127297 to 55128287 990 + pseudogene predicted gene 16581
Cpgi262 1 55130974 to 55131955 981 CpG island CpG island 262
Tssr11715 1 55131038 to 55131053 15 - TSS region transcription start site region 11715
Tssr6714 1 55131095 to 55131108 13 + TSS region transcription start site region 6714
Tssr6715 1 55131237 to 55131249 12 + TSS region transcription start site region 6715
Mob4 1 55131245 to 55154899 23654 + protein coding gene MOB family member 4, phocein
Tssr6716 1 55131253 to 55131302 49 + TSS region transcription start site region 6716
Tssr6717 1 55131317 to 55131331 14 + TSS region transcription start site region 6717
Tssr11716 1 55131623 to 55131654 31 - TSS region transcription start site region 11716
Tssr6718 1 55147628 to 55147633 5 + TSS region transcription start site region 6718
Gm6822 1 55160747 to 55161053 306 - pseudogene predicted pseudogene 6822
Rftn2 1 55170159 to 55226782 56623 - protein coding gene raftlin family member 2