Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:5395394-7366032

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38264 1 5403547 to 5405578 2031 + unclassified gene predicted gene, 38264
D1Mit474 1 5579697 to 5579843 146 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 474
Oprk1 1 5588466 to 5606131 17665 + protein coding gene opioid receptor, kappa 1
Gm36965 1 5617837 to 5618230 393 - pseudogene predicted gene, 36965
Tssr10902 1 5618200 to 5618211 11 - TSS region transcription start site region 10902
Gm22463 1 5644645 to 5644745 100 - miRNA gene predicted gene, 22463
Gm37429 1 5842874 to 5844672 1798 - unclassified gene predicted gene, 37429
Alpq4 1 5906465 to 5906465 0 QTL alcohol preference QTL 4
Npbwr1 1 5913707 to 5917398 3691 - protein coding gene neuropeptides B/W receptor 1
Cpgi15 1 5916286 to 5917516 1230 CpG island CpG island 15
Gm19214 1 6048972 to 6050045 1073 - pseudogene predicted gene, 19214
Gm46206 1 6164706 to 6167315 2609 - lncRNA gene predicted gene, 46206
4732440D04Rik 1 6209866 to 6215293 5427 - antisense lncRNA gene RIKEN cDNA 4732440D04 gene
Cpgi16 1 6214130 to 6215591 1461 CpG island CpG island 16
Tssr10903 1 6214436 to 6214447 11 - TSS region transcription start site region 10903
Tssr10904 1 6214515 to 6214534 19 - TSS region transcription start site region 10904
Tssr10905 1 6214539 to 6214572 33 - TSS region transcription start site region 10905
Tssr10906 1 6214574 to 6214605 31 - TSS region transcription start site region 10906
Tssr5820 1 6214627 to 6214683 56 + TSS region transcription start site region 5820
Rb1cc1 1 6214662 to 6276374 61712 + protein coding gene RB1-inducible coiled-coil 1
Tssr5821 1 6214684 to 6214722 38 + TSS region transcription start site region 5821
Tssr5822 1 6214787 to 6214801 14 + TSS region transcription start site region 5822
Tssr5823 1 6214806 to 6214817 11 + TSS region transcription start site region 5823
Tssr5824 1 6214828 to 6214838 10 + TSS region transcription start site region 5824
Tssr5825 1 6214857 to 6214866 9 + TSS region transcription start site region 5825
Tssr5826 1 6222703 to 6222707 4 + TSS region transcription start site region 5826
Tssr5827 1 6249311 to 6249329 18 + TSS region transcription start site region 5827
Tssr5828 1 6249702 to 6249714 12 + TSS region transcription start site region 5828
Tssr5829 1 6267083 to 6267088 5 + TSS region transcription start site region 5829
Tssr2 1 6324643 to 6324646 3 + TSS region transcription start site region 2
Cpgi17 1 6359030 to 6359537 507 CpG island CpG island 17
Alkal1 1 6359331 to 6394731 35400 + protein coding gene ALK and LTK ligand 1
Gm46083 1 6377512 to 6382119 4607 - lncRNA gene predicted gene, 46083
Tssr5830 1 6380272 to 6380282 10 + TSS region transcription start site region 5830
Gm2147 1 6380394 to 6381032 638 + pseudogene predicted gene 2147
Tssr10907 1 6382543 to 6382545 2 - TSS region transcription start site region 10907
Gm7417 1 6382634 to 6383106 472 - pseudogene predicted gene 7417
Cpgi18 1 6382766 to 6383291 525 CpG island CpG island 18
Tssr10908 1 6383047 to 6383058 11 - TSS region transcription start site region 10908
Gm19026 1 6429658 to 6441296 11638 - pseudogene predicted gene, 19026
Cpgi19 1 6440858 to 6441884 1026 CpG island CpG island 19
Tssr10909 1 6443557 to 6443567 10 - TSS region transcription start site region 10909
Tssr5831 1 6453818 to 6453830 12 + TSS region transcription start site region 5831
Tssr5832 1 6453842 to 6453853 11 + TSS region transcription start site region 5832
Tssr10910 1 6454279 to 6454305 26 - TSS region transcription start site region 10910
Tssr5833 1 6475233 to 6475244 11 + TSS region transcription start site region 5833
Tssr5834 1 6482756 to 6482786 30 + TSS region transcription start site region 5834
St18 1 6487231 to 6860940 373709 + protein coding gene suppression of tumorigenicity 18
Tssr5835 1 6487307 to 6487338 31 + TSS region transcription start site region 5835
Tssr5836 1 6487371 to 6487378 7 + TSS region transcription start site region 5836
Tssr5837 1 6489175 to 6489200 25 + TSS region transcription start site region 5837
Tssr5838 1 6489217 to 6489245 28 + TSS region transcription start site region 5838
Tssr5839 1 6500370 to 6500397 27 + TSS region transcription start site region 5839
Tssr5840 1 6507835 to 6507838 3 + TSS region transcription start site region 5840
Tssr5841 1 6518504 to 6518516 12 + TSS region transcription start site region 5841
Tssr5842 1 6518662 to 6518683 21 + TSS region transcription start site region 5842
Tssr5843 1 6527812 to 6527860 48 + TSS region transcription start site region 5843
Tssr5844 1 6527913 to 6527936 23 + TSS region transcription start site region 5844
Tssr5845 1 6527954 to 6527987 33 + TSS region transcription start site region 5845
Tssr5846 1 6528005 to 6528017 12 + TSS region transcription start site region 5846
Tssr5847 1 6528092 to 6528108 16 + TSS region transcription start site region 5847
Tssr5848 1 6528253 to 6528274 21 + TSS region transcription start site region 5848
Tssr5849 1 6528276 to 6528310 34 + TSS region transcription start site region 5849
Tssr5850 1 6537391 to 6537423 32 + TSS region transcription start site region 5850
Tssr5851 1 6539788 to 6539805 17 + TSS region transcription start site region 5851
Tssr5852 1 6544996 to 6545036 40 + TSS region transcription start site region 5852
Tssr5853 1 6574169 to 6574193 24 + TSS region transcription start site region 5853
Tssr5854 1 6576044 to 6576089 45 + TSS region transcription start site region 5854
Tssr5855 1 6591615 to 6591623 8 + TSS region transcription start site region 5855
Tssr5856 1 6597034 to 6597040 6 + TSS region transcription start site region 5856
Tssr5857 1 6598500 to 6598504 4 + TSS region transcription start site region 5857
Tssr5858 1 6599676 to 6599686 10 + TSS region transcription start site region 5858
Tssr5859 1 6634405 to 6634416 11 + TSS region transcription start site region 5859
Tssr5860 1 6635970 to 6635992 22 + TSS region transcription start site region 5860
Tssr5861 1 6635997 to 6636014 17 + TSS region transcription start site region 5861
Tssr5862 1 6637848 to 6637873 25 + TSS region transcription start site region 5862
Tssr5863 1 6638089 to 6638124 35 + TSS region transcription start site region 5863
Tssr5864 1 6666014 to 6666026 12 + TSS region transcription start site region 5864
Tssr5865 1 6670314 to 6670321 7 + TSS region transcription start site region 5865
Tssr5866 1 6671897 to 6671935 38 + TSS region transcription start site region 5866
Tssr5867 1 6673375 to 6673380 5 + TSS region transcription start site region 5867
Tssr5868 1 6674109 to 6674131 22 + TSS region transcription start site region 5868
Tssr5869 1 6707861 to 6707878 17 + TSS region transcription start site region 5869
Tssr5870 1 6730105 to 6730117 12 + TSS region transcription start site region 5870
Tssr5871 1 6730124 to 6730134 10 + TSS region transcription start site region 5871
Tssr5872 1 6730135 to 6730151 16 + TSS region transcription start site region 5872
Tssr5873 1 6734827 to 6734874 47 + TSS region transcription start site region 5873
Tssr5874 1 6734902 to 6734926 24 + TSS region transcription start site region 5874
Tssr5875 1 6749237 to 6749238 1 + TSS region transcription start site region 5875
Tssr5876 1 6842004 to 6842028 24 + TSS region transcription start site region 5876
Gm42492 1 6861237 to 6864151 2914 - unclassified gene predicted gene 42492
Gm7449 1 6910560 to 6911222 662 + pseudogene predicted gene 7449
Tssr5877 1 6916534 to 6916536 2 + TSS region transcription start site region 5877
Gm37108 1 6916559 to 6923588 7029 + pseudogene predicted gene, 37108
Gm37275 1 6929759 to 6929788 29 + pseudogene predicted gene, 37275
Tssr5878 1 6995220 to 6995221 1 + TSS region transcription start site region 5878
Gm37225 1 6998217 to 6998541 324 + pseudogene predicted gene, 37225
Gm37489 1 7013762 to 7013920 158 + pseudogene predicted gene, 37489
Gm5694 1 7035915 to 7037217 1302 + pseudogene predicted gene 5694
Tssr5879 1 7068363 to 7068364 1 + TSS region transcription start site region 5879
Cpgi20 1 7088385 to 7089443 1058 CpG island CpG island 20
Tssr10911 1 7088711 to 7088718 7 - TSS region transcription start site region 10911
Tssr10912 1 7088740 to 7088782 42 - TSS region transcription start site region 10912
Tssr5880 1 7088917 to 7088993 76 + TSS region transcription start site region 5880
Pcmtd1 1 7088920 to 7173628 84708 + protein coding gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
Tssr5881 1 7088998 to 7089077 79 + TSS region transcription start site region 5881
Tssr5882 1 7089101 to 7089117 16 + TSS region transcription start site region 5882
Tssr5883 1 7089130 to 7089178 48 + TSS region transcription start site region 5883
Tssr5884 1 7089187 to 7089200 13 + TSS region transcription start site region 5884
Tssr5885 1 7098126 to 7098131 5 + TSS region transcription start site region 5885
Tssr5886 1 7111646 to 7111660 14 + TSS region transcription start site region 5886
Tssr5887 1 7119819 to 7119825 6 + TSS region transcription start site region 5887
Tssr3 1 7130807 to 7130811 4 + TSS region transcription start site region 3
Gm26983 1 7136199 to 7136586 387 - pseudogene predicted gene, 26983
Tssr10913 1 7136613 to 7136616 3 - TSS region transcription start site region 10913
Gm38372 1 7148110 to 7152137 4027 + unclassified gene predicted gene, 38372
Tssr5888 1 7177671 to 7177679 8 + TSS region transcription start site region 5888
Gm9826 1 7177739 to 7179037 1298 + pseudogene predicted gene 9826
Nras-ps2 1 7189742 to 7189919 177 - pseudogene neuroblastoma ras oncogene, pseudogene 2
Tssr5889 1 7204211 to 7204213 2 + TSS region transcription start site region 5889
Gm23274 1 7265803 to 7265932 129 + snoRNA gene predicted gene, 23274
D1Mit428 1 7267494 to 7267606 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 428
D1Mit428.2 1 7267575 to 7267701 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 428.2
Gm19002 1 7315451 to 7316462 1011 + pseudogene predicted gene, 19002
Gm26901 1 7349406 to 7397869 48463 - lincRNA gene predicted gene, 26901