Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:53811945-54981951

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hecw2 1 53806872 to 54195034 388162 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
Tssr6697 1 53823712 to 53823723 11 + TSS region transcription start site region 6697
Tssr6698 1 53823725 to 53823746 21 + TSS region transcription start site region 6698
Tssr11669 1 53823858 to 53823892 34 - TSS region transcription start site region 11669
Tssr11670 1 53823945 to 53823963 18 - TSS region transcription start site region 11670
Tssr6699 1 53824174 to 53824210 36 + TSS region transcription start site region 6699
Tssr11671 1 53824976 to 53824987 11 - TSS region transcription start site region 11671
Tssr11672 1 53824993 to 53825003 10 - TSS region transcription start site region 11672
Tssr11673 1 53825067 to 53825072 5 - TSS region transcription start site region 11673
Tssr84 1 53825177 to 53825186 9 + TSS region transcription start site region 84
Mir7681 1 53849424 to 53849495 71 + miRNA gene microRNA 7681
Tssr11674 1 53850921 to 53850962 41 - TSS region transcription start site region 11674
Tssr6700 1 53851592 to 53851610 18 + TSS region transcription start site region 6700
Tssr85 1 53851614 to 53851630 16 + TSS region transcription start site region 85
Gm24251 1 53886828 to 53886941 113 - snRNA gene predicted gene, 24251
Tssr11675 1 53887736 to 53887746 10 - TSS region transcription start site region 11675
Tssr11676 1 53914628 to 53914639 11 - TSS region transcription start site region 11676
Tssr11677 1 53978511 to 53978530 19 - TSS region transcription start site region 11677
Tssr11678 1 53978540 to 53978584 44 - TSS region transcription start site region 11678
Tssr11679 1 53978607 to 53978617 10 - TSS region transcription start site region 11679
Tssr11680 1 54142718 to 54142723 5 - TSS region transcription start site region 11680
Gm37633 1 54152397 to 54155096 2699 - unclassified gene predicted gene, 37633
Tssr11681 1 54155320 to 54155325 5 - TSS region transcription start site region 11681
Tssr11682 1 54175842 to 54175849 7 - TSS region transcription start site region 11682
Cpgi254 1 54194095 to 54195415 1320 CpG island CpG island 254
Tssr11683 1 54195189 to 54195211 22 - TSS region transcription start site region 11683
Gm25829 1 54249102 to 54249208 106 - snRNA gene predicted gene, 25829
Cpgi255 1 54250499 to 54250827 328 CpG island CpG island 255
Tssr11684 1 54250591 to 54250603 12 - TSS region transcription start site region 11684
Tssr6701 1 54250673 to 54250699 26 + TSS region transcription start site region 6701
Ccdc150 1 54250683 to 54368727 118044 + protein coding gene coiled-coil domain containing 150
Tssr6702 1 54250813 to 54250844 31 + TSS region transcription start site region 6702
Tssr6703 1 54329996 to 54330005 9 + TSS region transcription start site region 6703
Gtf3c3 1 54396004 to 54438971 42967 - protein coding gene general transcription factor IIIC, polypeptide 3
Tssr11685 1 54396945 to 54396951 6 - TSS region transcription start site region 11685
Cpgi256 1 54438751 to 54439143 392 CpG island CpG island 256
Tssr11686 1 54438940 to 54438994 54 - TSS region transcription start site region 11686
Tssr11687 1 54439003 to 54439014 11 - TSS region transcription start site region 11687
Gm34066 1 54442697 to 54447094 4397 - lincRNA gene predicted gene, 34066
Pgap1 1 54473000 to 54557684 84684 - protein coding gene post-GPI attachment to proteins 1
Tssr11688 1 54483166 to 54483171 5 - TSS region transcription start site region 11688
Tssr11689 1 54484818 to 54484842 24 - TSS region transcription start site region 11689
Gm36955 1 54518610 to 54520270 1660 - unclassified gene predicted gene, 36955
Cpgi257 1 54557174 to 54558112 938 CpG island CpG island 257
Tssr11690 1 54557595 to 54557698 103 - TSS region transcription start site region 11690
Gm19637 1 54566703 to 54567281 578 + pseudogene predicted gene, 19637
Tssr86 1 54583871 to 54583880 9 + TSS region transcription start site region 86
Tssr11691 1 54585190 to 54585214 24 - TSS region transcription start site region 11691
Tssr11692 1 54585451 to 54585463 12 - TSS region transcription start site region 11692
Tssr6704 1 54585733 to 54585765 32 + TSS region transcription start site region 6704
Ankrd44 1 54645340 to 54926387 281047 - protein coding gene ankyrin repeat domain 44
4930444A19Rik 1 54681198 to 54766354 85156 + antisense lncRNA gene RIKEN cDNA 4930444A19 gene
Tssr6705 1 54681760 to 54681770 10 + TSS region transcription start site region 6705
Tssr11693 1 54716862 to 54716868 6 - TSS region transcription start site region 11693
Tssr11694 1 54732715 to 54732719 4 - TSS region transcription start site region 11694
Gm37370 1 54737166 to 54738575 1409 - unclassified gene predicted gene, 37370
Gm24053 1 54769218 to 54769322 104 + miRNA gene predicted gene, 24053
Tssr11695 1 54809964 to 54810001 37 - TSS region transcription start site region 11695
Tssr11696 1 54907164 to 54907175 11 - TSS region transcription start site region 11696
A130048G24Rik 1 54913845 to 54916594 2749 - unclassified gene RIKEN cDNA A130048G24 gene
Tssr11697 1 54914241 to 54914249 8 - TSS region transcription start site region 11697
Cpgi258 1 54925497 to 54926847 1350 CpG island CpG island 258
Tssr6706 1 54926155 to 54926191 36 + TSS region transcription start site region 6706
Tssr11698 1 54926293 to 54926304 11 - TSS region transcription start site region 11698
Tssr11699 1 54926311 to 54926402 91 - TSS region transcription start site region 11699
Tssr11700 1 54926408 to 54926415 7 - TSS region transcription start site region 11700