Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:53194095-55195415

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pms1 1 53189187 to 53297018 107831 - protein coding gene PMS1 homolog 1, mismatch repair system component
Gm28777 1 53196113 to 53197695 1582 + antisense lncRNA gene predicted gene 28777
Cpgi250 1 53296620 to 53297445 825 CpG island CpG island 250
Tssr11646 1 53296958 to 53296997 39 - TSS region transcription start site region 11646
Tssr11647 1 53297001 to 53297023 22 - TSS region transcription start site region 11647
Tssr6687 1 53297070 to 53297094 24 + TSS region transcription start site region 6687
Ormdl1 1 53297095 to 53310245 13150 + protein coding gene ORM1-like 1 (S. cerevisiae)
Tssr6688 1 53297096 to 53297124 28 + TSS region transcription start site region 6688
Gm28778 1 53297111 to 53318035 20924 + protein coding gene predicted gene 28778
Tssr6689 1 53297147 to 53297156 9 + TSS region transcription start site region 6689
Tssr6690 1 53313622 to 53313635 13 + TSS region transcription start site region 6690
Osgepl1 1 53313624 to 53326343 12719 + protein coding gene O-sialoglycoprotein endopeptidase-like 1
Tssr6691 1 53313636 to 53313682 46 + TSS region transcription start site region 6691
Tssr6692 1 53313692 to 53313701 9 + TSS region transcription start site region 6692
Tssr83 1 53313743 to 53313748 5 + TSS region transcription start site region 83
Gm28551 1 53325507 to 53352667 27160 - protein coding gene predicted gene 28551
Gm18800 1 53326181 to 53332724 6543 - pseudogene predicted gene, 18800
Tssr11648 1 53342217 to 53342242 25 - TSS region transcription start site region 11648
Asnsd1 1 53344617 to 53352752 8135 - protein coding gene asparagine synthetase domain containing 1
Cpgi251 1 53352369 to 53352900 531 CpG island CpG island 251
Tssr11649 1 53352637 to 53352716 79 - TSS region transcription start site region 11649
Tssr6693 1 53360389 to 53360397 8 + TSS region transcription start site region 6693
Gm28779 1 53362149 to 53362471 322 - pseudogene predicted gene 28779
Gm6799 1 53363114 to 53363686 572 + pseudogene predicted gene 6799
Gm6801 1 53390415 to 53392585 2170 + pseudogene predicted gene 6801
Dnah7a 1 53397006 to 53706784 309778 - protein coding gene dynein, axonemal, heavy chain 7A
Gm25240 1 53443271 to 53443395 124 - miRNA gene predicted gene, 25240
D1Mit544 1 53523554 to 53523664 110 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 544
Tssr11650 1 53548880 to 53548881 1 - TSS region transcription start site region 11650
Gm32311 1 53704477 to 53760971 56494 + lncRNA gene predicted gene, 32311
Cpgi252 1 53706445 to 53706941 496 CpG island CpG island 252
Tssr11651 1 53706775 to 53706841 66 - TSS region transcription start site region 11651
Tssr6694 1 53750129 to 53750153 24 + TSS region transcription start site region 6694
Tssr11652 1 53751359 to 53751391 32 - TSS region transcription start site region 11652
Stk17b 1 53755512 to 53785215 29703 - protein coding gene serine/threonine kinase 17b (apoptosis-inducing)
Tssr11653 1 53760773 to 53760777 4 - TSS region transcription start site region 11653
Tssr11654 1 53773470 to 53773475 5 - TSS region transcription start site region 11654
Tssr11655 1 53774003 to 53774014 11 - TSS region transcription start site region 11655
Tssr11656 1 53774073 to 53774085 12 - TSS region transcription start site region 11656
Tssr11657 1 53774089 to 53774111 22 - TSS region transcription start site region 11657
Tssr11658 1 53774122 to 53774131 9 - TSS region transcription start site region 11658
Tssr11659 1 53775649 to 53775673 24 - TSS region transcription start site region 11659
Tssr11660 1 53776641 to 53776662 21 - TSS region transcription start site region 11660
Tssr11661 1 53776678 to 53776700 22 - TSS region transcription start site region 11661
Tssr11662 1 53776702 to 53776707 5 - TSS region transcription start site region 11662
Tssr11663 1 53783808 to 53783813 5 - TSS region transcription start site region 11663
Tssr11664 1 53784320 to 53784336 16 - TSS region transcription start site region 11664
Cpgi253 1 53784397 to 53785396 999 CpG island CpG island 253
Tssr6695 1 53784467 to 53784476 9 + TSS region transcription start site region 6695
Tssr6696 1 53784479 to 53784490 11 + TSS region transcription start site region 6696
Tssr11665 1 53785148 to 53785159 11 - TSS region transcription start site region 11665
Tssr11666 1 53785164 to 53785189 25 - TSS region transcription start site region 11666
Tssr11667 1 53785214 to 53785229 15 - TSS region transcription start site region 11667
Gm37863 1 53791201 to 53792657 1456 + unclassified gene predicted gene, 37863
Tssr11668 1 53791443 to 53791454 11 - TSS region transcription start site region 11668
Hecw2 1 53806872 to 54195034 388162 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
Tssr6697 1 53823712 to 53823723 11 + TSS region transcription start site region 6697
Tssr6698 1 53823725 to 53823746 21 + TSS region transcription start site region 6698
Tssr11669 1 53823858 to 53823892 34 - TSS region transcription start site region 11669
Tssr11670 1 53823945 to 53823963 18 - TSS region transcription start site region 11670
Tssr6699 1 53824174 to 53824210 36 + TSS region transcription start site region 6699
Tssr11671 1 53824976 to 53824987 11 - TSS region transcription start site region 11671
Tssr11672 1 53824993 to 53825003 10 - TSS region transcription start site region 11672
Tssr11673 1 53825067 to 53825072 5 - TSS region transcription start site region 11673
Tssr84 1 53825177 to 53825186 9 + TSS region transcription start site region 84
Mir7681 1 53849424 to 53849495 71 + miRNA gene microRNA 7681
Tssr11674 1 53850921 to 53850962 41 - TSS region transcription start site region 11674
Tssr6700 1 53851592 to 53851610 18 + TSS region transcription start site region 6700
Tssr85 1 53851614 to 53851630 16 + TSS region transcription start site region 85
Gm24251 1 53886828 to 53886941 113 - snRNA gene predicted gene, 24251
Tssr11675 1 53887736 to 53887746 10 - TSS region transcription start site region 11675
Tssr11676 1 53914628 to 53914639 11 - TSS region transcription start site region 11676
Tssr11677 1 53978511 to 53978530 19 - TSS region transcription start site region 11677
Tssr11678 1 53978540 to 53978584 44 - TSS region transcription start site region 11678
Tssr11679 1 53978607 to 53978617 10 - TSS region transcription start site region 11679
Tssr11680 1 54142718 to 54142723 5 - TSS region transcription start site region 11680
Gm37633 1 54152397 to 54155096 2699 - unclassified gene predicted gene, 37633
Tssr11681 1 54155320 to 54155325 5 - TSS region transcription start site region 11681
Tssr11682 1 54175842 to 54175849 7 - TSS region transcription start site region 11682
Cpgi254 1 54194095 to 54195415 1320 CpG island CpG island 254
Tssr11683 1 54195189 to 54195211 22 - TSS region transcription start site region 11683
Gm25829 1 54249102 to 54249208 106 - snRNA gene predicted gene, 25829
Cpgi255 1 54250499 to 54250827 328 CpG island CpG island 255
Tssr11684 1 54250591 to 54250603 12 - TSS region transcription start site region 11684
Tssr6701 1 54250673 to 54250699 26 + TSS region transcription start site region 6701
Ccdc150 1 54250683 to 54368727 118044 + protein coding gene coiled-coil domain containing 150
Tssr6702 1 54250813 to 54250844 31 + TSS region transcription start site region 6702
Tssr6703 1 54329996 to 54330005 9 + TSS region transcription start site region 6703
Gtf3c3 1 54396004 to 54438971 42967 - protein coding gene general transcription factor IIIC, polypeptide 3
Tssr11685 1 54396945 to 54396951 6 - TSS region transcription start site region 11685
Cpgi256 1 54438751 to 54439143 392 CpG island CpG island 256
Tssr11686 1 54438940 to 54438994 54 - TSS region transcription start site region 11686
Tssr11687 1 54439003 to 54439014 11 - TSS region transcription start site region 11687
Gm34066 1 54442697 to 54447094 4397 - lincRNA gene predicted gene, 34066
Pgap1 1 54473000 to 54557684 84684 - protein coding gene post-GPI attachment to proteins 1
Tssr11688 1 54483166 to 54483171 5 - TSS region transcription start site region 11688
Tssr11689 1 54484818 to 54484842 24 - TSS region transcription start site region 11689
Gm36955 1 54518610 to 54520270 1660 - unclassified gene predicted gene, 36955
Cpgi257 1 54557174 to 54558112 938 CpG island CpG island 257
Tssr11690 1 54557595 to 54557698 103 - TSS region transcription start site region 11690
Gm19637 1 54566703 to 54567281 578 + pseudogene predicted gene, 19637
Tssr86 1 54583871 to 54583880 9 + TSS region transcription start site region 86
Tssr11691 1 54585190 to 54585214 24 - TSS region transcription start site region 11691
Tssr11692 1 54585451 to 54585463 12 - TSS region transcription start site region 11692
Tssr6704 1 54585733 to 54585765 32 + TSS region transcription start site region 6704
Ankrd44 1 54645340 to 54926387 281047 - protein coding gene ankyrin repeat domain 44
4930444A19Rik 1 54681198 to 54766354 85156 + antisense lncRNA gene RIKEN cDNA 4930444A19 gene
Tssr6705 1 54681760 to 54681770 10 + TSS region transcription start site region 6705
Tssr11693 1 54716862 to 54716868 6 - TSS region transcription start site region 11693
Tssr11694 1 54732715 to 54732719 4 - TSS region transcription start site region 11694
Gm37370 1 54737166 to 54738575 1409 - unclassified gene predicted gene, 37370
Gm24053 1 54769218 to 54769322 104 + miRNA gene predicted gene, 24053
Tssr11695 1 54809964 to 54810001 37 - TSS region transcription start site region 11695
Tssr11696 1 54907164 to 54907175 11 - TSS region transcription start site region 11696
A130048G24Rik 1 54913845 to 54916594 2749 - unclassified gene RIKEN cDNA A130048G24 gene
Tssr11697 1 54914241 to 54914249 8 - TSS region transcription start site region 11697
Cpgi258 1 54925497 to 54926847 1350 CpG island CpG island 258
Tssr6706 1 54926155 to 54926191 36 + TSS region transcription start site region 6706
Tssr11698 1 54926293 to 54926304 11 - TSS region transcription start site region 11698
Tssr11699 1 54926311 to 54926402 91 - TSS region transcription start site region 11699
Tssr11700 1 54926408 to 54926415 7 - TSS region transcription start site region 11700
Sf3b1 1 54985169 to 55027481 42312 - protein coding gene splicing factor 3b, subunit 1
Tssr11701 1 55000118 to 55000144 26 - TSS region transcription start site region 11701
Tssr11702 1 55001107 to 55001110 3 - TSS region transcription start site region 11702
Tssr11703 1 55003478 to 55003497 19 - TSS region transcription start site region 11703
D1Dcr38 1 55006848 to 55006943 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 38
A430105D02Rik 1 55009204 to 55010357 1153 unclassified gene RIKEN cDNA A430105D02 gene
Tssr11704 1 55010335 to 55010336 1 - TSS region transcription start site region 11704
Tssr11705 1 55019326 to 55019344 18 - TSS region transcription start site region 11705
Tssr11706 1 55022090 to 55022095 5 - TSS region transcription start site region 11706
Tssr11707 1 55023816 to 55023820 4 - TSS region transcription start site region 11707
Tssr6707 1 55026349 to 55026376 27 + TSS region transcription start site region 6707
Cpgi259 1 55026820 to 55027745 925 CpG island CpG island 259
Tssr11708 1 55027377 to 55027406 29 - TSS region transcription start site region 11708
Tssr11709 1 55027473 to 55027484 11 - TSS region transcription start site region 11709
Tssr6708 1 55027597 to 55027600 3 + TSS region transcription start site region 6708
Tssr6709 1 55034090 to 55034095 5 + TSS region transcription start site region 6709
E330011M16Rik 1 55051319 to 55053112 1793 - unclassified gene RIKEN cDNA E330011M16 gene
Tssr87 1 55052282 to 55052293 11 + TSS region transcription start site region 87
Cpgi260 1 55052284 to 55053450 1166 CpG island CpG island 260
Tssr11710 1 55052598 to 55052622 24 - TSS region transcription start site region 11710
Tssr6710 1 55052763 to 55052777 14 + TSS region transcription start site region 6710
Coq10b 1 55052770 to 55072702 19932 + protein coding gene coenzyme Q10B
Tssr6711 1 55052831 to 55052882 51 + TSS region transcription start site region 6711
Gm17971 1 55066264 to 55067069 805 + pseudogene predicted gene, 17971
Hspd1 1 55077834 to 55088217 10383 - protein coding gene heat shock protein 1 (chaperonin)
Cpgi261 1 55087067 to 55088740 1673 CpG island CpG island 261
Tssr11711 1 55087825 to 55087885 60 - TSS region transcription start site region 11711
Tssr6712 1 55087951 to 55087994 43 + TSS region transcription start site region 6712
Tssr11712 1 55088030 to 55088102 72 - TSS region transcription start site region 11712
Tssr11713 1 55088103 to 55088117 14 - TSS region transcription start site region 11713
Hspe1 1 55088148 to 55091317 3169 + protein coding gene heat shock protein 1 (chaperonin 10)
Tssr11714 1 55088156 to 55088180 24 - TSS region transcription start site region 11714
Tssr6713 1 55088306 to 55088352 46 + TSS region transcription start site region 6713
Gm5147 1 55120080 to 55120873 793 - pseudogene predicted gene 5147
Gm16581 1 55127297 to 55128287 990 + pseudogene predicted gene 16581
Cpgi262 1 55130974 to 55131955 981 CpG island CpG island 262
Tssr11715 1 55131038 to 55131053 15 - TSS region transcription start site region 11715
Tssr6714 1 55131095 to 55131108 13 + TSS region transcription start site region 6714
Tssr6715 1 55131237 to 55131249 12 + TSS region transcription start site region 6715
Mob4 1 55131245 to 55154899 23654 + protein coding gene MOB family member 4, phocein
Tssr6716 1 55131253 to 55131302 49 + TSS region transcription start site region 6716
Tssr6717 1 55131317 to 55131331 14 + TSS region transcription start site region 6717
Tssr11716 1 55131623 to 55131654 31 - TSS region transcription start site region 11716
Tssr6718 1 55147628 to 55147633 5 + TSS region transcription start site region 6718
Gm6822 1 55160747 to 55161053 306 - pseudogene predicted pseudogene 6822
Rftn2 1 55170159 to 55226782 56623 - protein coding gene raftlin family member 2