Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:53193554-53853664

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pms1 1 53189187 to 53297018 107831 - protein coding gene PMS1 homolog 1, mismatch repair system component
Gm28777 1 53196113 to 53197695 1582 + antisense lncRNA gene predicted gene 28777
Cpgi250 1 53296620 to 53297445 825 CpG island CpG island 250
Tssr11646 1 53296958 to 53296997 39 - TSS region transcription start site region 11646
Tssr11647 1 53297001 to 53297023 22 - TSS region transcription start site region 11647
Tssr6687 1 53297070 to 53297094 24 + TSS region transcription start site region 6687
Ormdl1 1 53297095 to 53310245 13150 + protein coding gene ORM1-like 1 (S. cerevisiae)
Tssr6688 1 53297096 to 53297124 28 + TSS region transcription start site region 6688
Gm28778 1 53297111 to 53318035 20924 + protein coding gene predicted gene 28778
Tssr6689 1 53297147 to 53297156 9 + TSS region transcription start site region 6689
Tssr6690 1 53313622 to 53313635 13 + TSS region transcription start site region 6690
Osgepl1 1 53313624 to 53326343 12719 + protein coding gene O-sialoglycoprotein endopeptidase-like 1
Tssr6691 1 53313636 to 53313682 46 + TSS region transcription start site region 6691
Tssr6692 1 53313692 to 53313701 9 + TSS region transcription start site region 6692
Tssr83 1 53313743 to 53313748 5 + TSS region transcription start site region 83
Gm28551 1 53325507 to 53352667 27160 - protein coding gene predicted gene 28551
Gm18800 1 53326181 to 53332724 6543 - pseudogene predicted gene, 18800
Tssr11648 1 53342217 to 53342242 25 - TSS region transcription start site region 11648
Asnsd1 1 53344617 to 53352752 8135 - protein coding gene asparagine synthetase domain containing 1
Cpgi251 1 53352369 to 53352900 531 CpG island CpG island 251
Tssr11649 1 53352637 to 53352716 79 - TSS region transcription start site region 11649
Tssr6693 1 53360389 to 53360397 8 + TSS region transcription start site region 6693
Gm28779 1 53362149 to 53362471 322 - pseudogene predicted gene 28779
Gm6799 1 53363114 to 53363686 572 + pseudogene predicted gene 6799
Gm6801 1 53390415 to 53392585 2170 + pseudogene predicted gene 6801
Dnah7a 1 53397006 to 53706784 309778 - protein coding gene dynein, axonemal, heavy chain 7A
Gm25240 1 53443271 to 53443395 124 - miRNA gene predicted gene, 25240
D1Mit544 1 53523554 to 53523664 110 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 544
Tssr11650 1 53548880 to 53548881 1 - TSS region transcription start site region 11650
Gm32311 1 53704477 to 53760971 56494 + lncRNA gene predicted gene, 32311
Cpgi252 1 53706445 to 53706941 496 CpG island CpG island 252
Tssr11651 1 53706775 to 53706841 66 - TSS region transcription start site region 11651
Tssr6694 1 53750129 to 53750153 24 + TSS region transcription start site region 6694
Tssr11652 1 53751359 to 53751391 32 - TSS region transcription start site region 11652
Stk17b 1 53755512 to 53785215 29703 - protein coding gene serine/threonine kinase 17b (apoptosis-inducing)
Tssr11653 1 53760773 to 53760777 4 - TSS region transcription start site region 11653
Tssr11654 1 53773470 to 53773475 5 - TSS region transcription start site region 11654
Tssr11655 1 53774003 to 53774014 11 - TSS region transcription start site region 11655
Tssr11656 1 53774073 to 53774085 12 - TSS region transcription start site region 11656
Tssr11657 1 53774089 to 53774111 22 - TSS region transcription start site region 11657
Tssr11658 1 53774122 to 53774131 9 - TSS region transcription start site region 11658
Tssr11659 1 53775649 to 53775673 24 - TSS region transcription start site region 11659
Tssr11660 1 53776641 to 53776662 21 - TSS region transcription start site region 11660
Tssr11661 1 53776678 to 53776700 22 - TSS region transcription start site region 11661
Tssr11662 1 53776702 to 53776707 5 - TSS region transcription start site region 11662
Tssr11663 1 53783808 to 53783813 5 - TSS region transcription start site region 11663
Tssr11664 1 53784320 to 53784336 16 - TSS region transcription start site region 11664
Cpgi253 1 53784397 to 53785396 999 CpG island CpG island 253
Tssr6695 1 53784467 to 53784476 9 + TSS region transcription start site region 6695
Tssr6696 1 53784479 to 53784490 11 + TSS region transcription start site region 6696
Tssr11665 1 53785148 to 53785159 11 - TSS region transcription start site region 11665
Tssr11666 1 53785164 to 53785189 25 - TSS region transcription start site region 11666
Tssr11667 1 53785214 to 53785229 15 - TSS region transcription start site region 11667
Gm37863 1 53791201 to 53792657 1456 + unclassified gene predicted gene, 37863
Tssr11668 1 53791443 to 53791454 11 - TSS region transcription start site region 11668
Hecw2 1 53806872 to 54195034 388162 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
Tssr6697 1 53823712 to 53823723 11 + TSS region transcription start site region 6697
Tssr6698 1 53823725 to 53823746 21 + TSS region transcription start site region 6698
Tssr11669 1 53823858 to 53823892 34 - TSS region transcription start site region 11669
Tssr11670 1 53823945 to 53823963 18 - TSS region transcription start site region 11670
Tssr6699 1 53824174 to 53824210 36 + TSS region transcription start site region 6699
Tssr11671 1 53824976 to 53824987 11 - TSS region transcription start site region 11671
Tssr11672 1 53824993 to 53825003 10 - TSS region transcription start site region 11672
Tssr11673 1 53825067 to 53825072 5 - TSS region transcription start site region 11673
Tssr84 1 53825177 to 53825186 9 + TSS region transcription start site region 84
Mir7681 1 53849424 to 53849495 71 + miRNA gene microRNA 7681
Tssr11674 1 53850921 to 53850962 41 - TSS region transcription start site region 11674
Tssr6700 1 53851592 to 53851610 18 + TSS region transcription start site region 6700
Tssr85 1 53851614 to 53851630 16 + TSS region transcription start site region 85