Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:52692987-53203009

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mfsd6 1 52656299 to 52727462 71163 - protein coding gene major facilitator superfamily domain containing 6
Gm29670 1 52702272 to 52704762 2490 - sense intronic lncRNA gene predicted gene 29670
Cpgi246 1 52726359 to 52727727 1368 CpG island CpG island 246
Tssr11611 1 52726798 to 52726820 22 - TSS region transcription start site region 11611
Tssr11612 1 52726824 to 52726870 46 - TSS region transcription start site region 11612
Tssr11613 1 52727127 to 52727161 34 - TSS region transcription start site region 11613
Tssr11614 1 52727255 to 52727268 13 - TSS region transcription start site region 11614
Tssr11615 1 52727296 to 52727382 86 - TSS region transcription start site region 11615
Tssr11616 1 52727457 to 52727474 17 - TSS region transcription start site region 11616
Tssr11617 1 52734294 to 52734310 16 - TSS region transcription start site region 11617
Gm28650 1 52756719 to 52757129 410 + pseudogene predicted gene 28650
Inpp1 1 52785427 to 52817688 32261 - protein coding gene inositol polyphosphate-1-phosphatase
Tssr11618 1 52794926 to 52794930 4 - TSS region transcription start site region 11618
Tssr11619 1 52799485 to 52799518 33 - TSS region transcription start site region 11619
Tssr11620 1 52799519 to 52799533 14 - TSS region transcription start site region 11620
Tssr11621 1 52799542 to 52799562 20 - TSS region transcription start site region 11621
Tssr11622 1 52800388 to 52800405 17 - TSS region transcription start site region 11622
Tssr11623 1 52800418 to 52800448 30 - TSS region transcription start site region 11623
Cpgi247 1 52817050 to 52817938 888 CpG island CpG island 247
Tssr11624 1 52817441 to 52817477 36 - TSS region transcription start site region 11624
Tssr11625 1 52817503 to 52817583 80 - TSS region transcription start site region 11625
Tssr11626 1 52817643 to 52817693 50 - TSS region transcription start site region 11626
Tssr11627 1 52817695 to 52817736 41 - TSS region transcription start site region 11627
Tssr11628 1 52817738 to 52817778 40 - TSS region transcription start site region 11628
Tssr11629 1 52817796 to 52817823 27 - TSS region transcription start site region 11629
Cpgi248 1 52844793 to 52845392 599 CpG island CpG island 248
Tssr6682 1 52845032 to 52845062 30 + TSS region transcription start site region 6682
Hibch 1 52845038 to 52920986 75948 + protein coding gene 3-hydroxyisobutyryl-Coenzyme A hydrolase
Tssr6683 1 52845071 to 52845094 23 + TSS region transcription start site region 6683
Tssr6684 1 52845099 to 52845110 11 + TSS region transcription start site region 6684
Tssr6685 1 52845115 to 52845123 8 + TSS region transcription start site region 6685
Gm16107 1 52873137 to 52873998 861 - pseudogene predicted gene 16107
1700019D03Rik 1 52922320 to 52991340 69020 - protein coding gene RIKEN cDNA 1700019D03 gene
Tssr82 1 52934561 to 52934563 2 + TSS region transcription start site region 82
Tssr11630 1 52947987 to 52948009 22 - TSS region transcription start site region 11630
Tssr11631 1 52948011 to 52948018 7 - TSS region transcription start site region 11631
Cpgi249 1 52952541 to 52953430 889 CpG island CpG island 249
Tssr11632 1 52952681 to 52952709 28 - TSS region transcription start site region 11632
Tssr11633 1 52952804 to 52952826 22 - TSS region transcription start site region 11633
Tssr11634 1 52952834 to 52952854 20 - TSS region transcription start site region 11634
Tssr11635 1 52953116 to 52953156 40 - TSS region transcription start site region 11635
Tssr11636 1 52953179 to 52953224 45 - TSS region transcription start site region 11636
Tssr11637 1 52953596 to 52953627 31 - TSS region transcription start site region 11637
Tssr11638 1 52963223 to 52963234 11 - TSS region transcription start site region 11638
Tssr11639 1 52963250 to 52963266 16 - TSS region transcription start site region 11639
Tssr11640 1 52963268 to 52963269 1 - TSS region transcription start site region 11640
Tssr11641 1 52963278 to 52963292 14 - TSS region transcription start site region 11641
Tssr11642 1 52972014 to 52972021 7 - TSS region transcription start site region 11642
Tssr11643 1 52972028 to 52972051 23 - TSS region transcription start site region 11643
Tssr11644 1 52992679 to 52992688 9 - TSS region transcription start site region 11644
D1Mit545 1 53004763 to 53004886 123 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 545
Tssr6686 1 53061637 to 53061642 5 + TSS region transcription start site region 6686
Mstn 1 53061640 to 53068079 6439 + protein coding gene myostatin
Gm24349 1 53100050 to 53100150 100 + snoRNA gene predicted gene, 24349
1700019A02Rik 1 53158577 to 53187636 29059 - protein coding gene RIKEN cDNA 1700019A02 gene
Tssr11645 1 53187596 to 53187635 39 - TSS region transcription start site region 11645
Pms1 1 53189187 to 53297018 107831 - protein coding gene PMS1 homolog 1, mismatch repair system component
Gm28777 1 53196113 to 53197695 1582 + antisense lncRNA gene predicted gene 28777