Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:52362006-54741784

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31955 1 52305615 to 52367667 62052 + lncRNA gene predicted gene, 31955
D1Mit18 1 52418578 to 52418733 155 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 18
Gm23460 1 52444436 to 52444544 108 - snRNA gene predicted gene, 23460
Nab1 1 52457294 to 52500679 43385 - protein coding gene Ngfi-A binding protein 1
Tssr11603 1 52472933 to 52472937 4 - TSS region transcription start site region 11603
Tssr11604 1 52498942 to 52498945 3 - TSS region transcription start site region 11604
Cpgi243 1 52499688 to 52501030 1342 CpG island CpG island 243
Tssr6674 1 52500009 to 52500071 62 + TSS region transcription start site region 6674
Tssr11605 1 52500236 to 52500276 40 - TSS region transcription start site region 11605
Tssr11606 1 52500353 to 52500449 96 - TSS region transcription start site region 11606
Tssr6675 1 52500648 to 52500651 3 + TSS region transcription start site region 6675
Gm5976 1 52503234 to 52504229 995 - pseudogene predicted gene 5976
Tssr11607 1 52504299 to 52504300 1 - TSS region transcription start site region 11607
Gm553 1 52504495 to 52520703 16208 + lincRNA gene predicted gene 553
Rps27a-ps1 1 52522239 to 52522701 462 + pseudogene ribosomal protein S27A, pseudogene 1
Tssr6676 1 52568476 to 52568487 11 + TSS region transcription start site region 6676
Tssr6677 1 52568495 to 52568504 9 + TSS region transcription start site region 6677
Gm28178 1 52570014 to 52580291 10277 - lincRNA gene predicted gene 28178
Gm5527 1 52584518 to 52585159 641 + pseudogene predicted gene 5527
Cpgi244 1 52597874 to 52598175 301 CpG island CpG island 244
Cpgi245 1 52630490 to 52631084 594 CpG island CpG island 245
Tssr6678 1 52630692 to 52630757 65 + TSS region transcription start site region 6678
Nemp2 1 52630703 to 52651919 21216 + protein coding gene nuclear envelope integral membrane protein 2
Tssr6679 1 52637508 to 52637513 5 + TSS region transcription start site region 6679
Gm37242 1 52653808 to 52655892 2084 - unclassified gene predicted gene, 37242
Tssr6680 1 52655527 to 52655532 5 + TSS region transcription start site region 6680
Mfsd6 1 52656299 to 52727462 71163 - protein coding gene major facilitator superfamily domain containing 6
Tssr11608 1 52658238 to 52658262 24 - TSS region transcription start site region 11608
Tssr11609 1 52658277 to 52658296 19 - TSS region transcription start site region 11609
Tssr11610 1 52661001 to 52661043 42 - TSS region transcription start site region 11610
Tssr6681 1 52684730 to 52684735 5 + TSS region transcription start site region 6681
Gm29670 1 52702272 to 52704762 2490 - sense intronic lncRNA gene predicted gene 29670
Cpgi246 1 52726359 to 52727727 1368 CpG island CpG island 246
Tssr11611 1 52726798 to 52726820 22 - TSS region transcription start site region 11611
Tssr11612 1 52726824 to 52726870 46 - TSS region transcription start site region 11612
Tssr11613 1 52727127 to 52727161 34 - TSS region transcription start site region 11613
Tssr11614 1 52727255 to 52727268 13 - TSS region transcription start site region 11614
Tssr11615 1 52727296 to 52727382 86 - TSS region transcription start site region 11615
Tssr11616 1 52727457 to 52727474 17 - TSS region transcription start site region 11616
Tssr11617 1 52734294 to 52734310 16 - TSS region transcription start site region 11617
Gm28650 1 52756719 to 52757129 410 + pseudogene predicted gene 28650
Inpp1 1 52785427 to 52817688 32261 - protein coding gene inositol polyphosphate-1-phosphatase
Tssr11618 1 52794926 to 52794930 4 - TSS region transcription start site region 11618
Tssr11619 1 52799485 to 52799518 33 - TSS region transcription start site region 11619
Tssr11620 1 52799519 to 52799533 14 - TSS region transcription start site region 11620
Tssr11621 1 52799542 to 52799562 20 - TSS region transcription start site region 11621
Tssr11622 1 52800388 to 52800405 17 - TSS region transcription start site region 11622
Tssr11623 1 52800418 to 52800448 30 - TSS region transcription start site region 11623
Cpgi247 1 52817050 to 52817938 888 CpG island CpG island 247
Tssr11624 1 52817441 to 52817477 36 - TSS region transcription start site region 11624
Tssr11625 1 52817503 to 52817583 80 - TSS region transcription start site region 11625
Tssr11626 1 52817643 to 52817693 50 - TSS region transcription start site region 11626
Tssr11627 1 52817695 to 52817736 41 - TSS region transcription start site region 11627
Tssr11628 1 52817738 to 52817778 40 - TSS region transcription start site region 11628
Tssr11629 1 52817796 to 52817823 27 - TSS region transcription start site region 11629
Cpgi248 1 52844793 to 52845392 599 CpG island CpG island 248
Tssr6682 1 52845032 to 52845062 30 + TSS region transcription start site region 6682
Hibch 1 52845038 to 52920986 75948 + protein coding gene 3-hydroxyisobutyryl-Coenzyme A hydrolase
Tssr6683 1 52845071 to 52845094 23 + TSS region transcription start site region 6683
Tssr6684 1 52845099 to 52845110 11 + TSS region transcription start site region 6684
Tssr6685 1 52845115 to 52845123 8 + TSS region transcription start site region 6685
Gm16107 1 52873137 to 52873998 861 - pseudogene predicted gene 16107
1700019D03Rik 1 52922320 to 52991340 69020 - protein coding gene RIKEN cDNA 1700019D03 gene
Tssr82 1 52934561 to 52934563 2 + TSS region transcription start site region 82
Tssr11630 1 52947987 to 52948009 22 - TSS region transcription start site region 11630
Tssr11631 1 52948011 to 52948018 7 - TSS region transcription start site region 11631
Cpgi249 1 52952541 to 52953430 889 CpG island CpG island 249
Tssr11632 1 52952681 to 52952709 28 - TSS region transcription start site region 11632
Tssr11633 1 52952804 to 52952826 22 - TSS region transcription start site region 11633
Tssr11634 1 52952834 to 52952854 20 - TSS region transcription start site region 11634
Tssr11635 1 52953116 to 52953156 40 - TSS region transcription start site region 11635
Tssr11636 1 52953179 to 52953224 45 - TSS region transcription start site region 11636
Tssr11637 1 52953596 to 52953627 31 - TSS region transcription start site region 11637
Tssr11638 1 52963223 to 52963234 11 - TSS region transcription start site region 11638
Tssr11639 1 52963250 to 52963266 16 - TSS region transcription start site region 11639
Tssr11640 1 52963268 to 52963269 1 - TSS region transcription start site region 11640
Tssr11641 1 52963278 to 52963292 14 - TSS region transcription start site region 11641
Tssr11642 1 52972014 to 52972021 7 - TSS region transcription start site region 11642
Tssr11643 1 52972028 to 52972051 23 - TSS region transcription start site region 11643
Tssr11644 1 52992679 to 52992688 9 - TSS region transcription start site region 11644
D1Mit545 1 53004763 to 53004886 123 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 545
Tssr6686 1 53061637 to 53061642 5 + TSS region transcription start site region 6686
Mstn 1 53061640 to 53068079 6439 + protein coding gene myostatin
Gm24349 1 53100050 to 53100150 100 + snoRNA gene predicted gene, 24349
1700019A02Rik 1 53158577 to 53187636 29059 - protein coding gene RIKEN cDNA 1700019A02 gene
Tssr11645 1 53187596 to 53187635 39 - TSS region transcription start site region 11645
Pms1 1 53189187 to 53297018 107831 - protein coding gene PMS1 homolog 1, mismatch repair system component
Gm28777 1 53196113 to 53197695 1582 + antisense lncRNA gene predicted gene 28777
Cpgi250 1 53296620 to 53297445 825 CpG island CpG island 250
Tssr11646 1 53296958 to 53296997 39 - TSS region transcription start site region 11646
Tssr11647 1 53297001 to 53297023 22 - TSS region transcription start site region 11647
Tssr6687 1 53297070 to 53297094 24 + TSS region transcription start site region 6687
Ormdl1 1 53297095 to 53310245 13150 + protein coding gene ORM1-like 1 (S. cerevisiae)
Tssr6688 1 53297096 to 53297124 28 + TSS region transcription start site region 6688
Gm28778 1 53297111 to 53318035 20924 + protein coding gene predicted gene 28778
Tssr6689 1 53297147 to 53297156 9 + TSS region transcription start site region 6689
Tssr6690 1 53313622 to 53313635 13 + TSS region transcription start site region 6690
Osgepl1 1 53313624 to 53326343 12719 + protein coding gene O-sialoglycoprotein endopeptidase-like 1
Tssr6691 1 53313636 to 53313682 46 + TSS region transcription start site region 6691
Tssr6692 1 53313692 to 53313701 9 + TSS region transcription start site region 6692
Tssr83 1 53313743 to 53313748 5 + TSS region transcription start site region 83
Gm28551 1 53325507 to 53352667 27160 - protein coding gene predicted gene 28551
Gm18800 1 53326181 to 53332724 6543 - pseudogene predicted gene, 18800
Tssr11648 1 53342217 to 53342242 25 - TSS region transcription start site region 11648
Asnsd1 1 53344617 to 53352752 8135 - protein coding gene asparagine synthetase domain containing 1
Cpgi251 1 53352369 to 53352900 531 CpG island CpG island 251
Tssr11649 1 53352637 to 53352716 79 - TSS region transcription start site region 11649
Tssr6693 1 53360389 to 53360397 8 + TSS region transcription start site region 6693
Gm28779 1 53362149 to 53362471 322 - pseudogene predicted gene 28779
Gm6799 1 53363114 to 53363686 572 + pseudogene predicted gene 6799
Gm6801 1 53390415 to 53392585 2170 + pseudogene predicted gene 6801
Dnah7a 1 53397006 to 53706784 309778 - protein coding gene dynein, axonemal, heavy chain 7A
Gm25240 1 53443271 to 53443395 124 - miRNA gene predicted gene, 25240
D1Mit544 1 53523554 to 53523664 110 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 544
Tssr11650 1 53548880 to 53548881 1 - TSS region transcription start site region 11650
Gm32311 1 53704477 to 53760971 56494 + lncRNA gene predicted gene, 32311
Cpgi252 1 53706445 to 53706941 496 CpG island CpG island 252
Tssr11651 1 53706775 to 53706841 66 - TSS region transcription start site region 11651
Tssr6694 1 53750129 to 53750153 24 + TSS region transcription start site region 6694
Tssr11652 1 53751359 to 53751391 32 - TSS region transcription start site region 11652
Stk17b 1 53755512 to 53785215 29703 - protein coding gene serine/threonine kinase 17b (apoptosis-inducing)
Tssr11653 1 53760773 to 53760777 4 - TSS region transcription start site region 11653
Tssr11654 1 53773470 to 53773475 5 - TSS region transcription start site region 11654
Tssr11655 1 53774003 to 53774014 11 - TSS region transcription start site region 11655
Tssr11656 1 53774073 to 53774085 12 - TSS region transcription start site region 11656
Tssr11657 1 53774089 to 53774111 22 - TSS region transcription start site region 11657
Tssr11658 1 53774122 to 53774131 9 - TSS region transcription start site region 11658
Tssr11659 1 53775649 to 53775673 24 - TSS region transcription start site region 11659
Tssr11660 1 53776641 to 53776662 21 - TSS region transcription start site region 11660
Tssr11661 1 53776678 to 53776700 22 - TSS region transcription start site region 11661
Tssr11662 1 53776702 to 53776707 5 - TSS region transcription start site region 11662
Tssr11663 1 53783808 to 53783813 5 - TSS region transcription start site region 11663
Tssr11664 1 53784320 to 53784336 16 - TSS region transcription start site region 11664
Cpgi253 1 53784397 to 53785396 999 CpG island CpG island 253
Tssr6695 1 53784467 to 53784476 9 + TSS region transcription start site region 6695
Tssr6696 1 53784479 to 53784490 11 + TSS region transcription start site region 6696
Tssr11665 1 53785148 to 53785159 11 - TSS region transcription start site region 11665
Tssr11666 1 53785164 to 53785189 25 - TSS region transcription start site region 11666
Tssr11667 1 53785214 to 53785229 15 - TSS region transcription start site region 11667
Gm37863 1 53791201 to 53792657 1456 + unclassified gene predicted gene, 37863
Tssr11668 1 53791443 to 53791454 11 - TSS region transcription start site region 11668
Hecw2 1 53806872 to 54195034 388162 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
Tssr6697 1 53823712 to 53823723 11 + TSS region transcription start site region 6697
Tssr6698 1 53823725 to 53823746 21 + TSS region transcription start site region 6698
Tssr11669 1 53823858 to 53823892 34 - TSS region transcription start site region 11669
Tssr11670 1 53823945 to 53823963 18 - TSS region transcription start site region 11670
Tssr6699 1 53824174 to 53824210 36 + TSS region transcription start site region 6699
Tssr11671 1 53824976 to 53824987 11 - TSS region transcription start site region 11671
Tssr11672 1 53824993 to 53825003 10 - TSS region transcription start site region 11672
Tssr11673 1 53825067 to 53825072 5 - TSS region transcription start site region 11673
Tssr84 1 53825177 to 53825186 9 + TSS region transcription start site region 84
Mir7681 1 53849424 to 53849495 71 + miRNA gene microRNA 7681
Tssr11674 1 53850921 to 53850962 41 - TSS region transcription start site region 11674
Tssr6700 1 53851592 to 53851610 18 + TSS region transcription start site region 6700
Tssr85 1 53851614 to 53851630 16 + TSS region transcription start site region 85
Gm24251 1 53886828 to 53886941 113 - snRNA gene predicted gene, 24251
Tssr11675 1 53887736 to 53887746 10 - TSS region transcription start site region 11675
Tssr11676 1 53914628 to 53914639 11 - TSS region transcription start site region 11676
Tssr11677 1 53978511 to 53978530 19 - TSS region transcription start site region 11677
Tssr11678 1 53978540 to 53978584 44 - TSS region transcription start site region 11678
Tssr11679 1 53978607 to 53978617 10 - TSS region transcription start site region 11679
Tssr11680 1 54142718 to 54142723 5 - TSS region transcription start site region 11680
Gm37633 1 54152397 to 54155096 2699 - unclassified gene predicted gene, 37633
Tssr11681 1 54155320 to 54155325 5 - TSS region transcription start site region 11681
Tssr11682 1 54175842 to 54175849 7 - TSS region transcription start site region 11682
Cpgi254 1 54194095 to 54195415 1320 CpG island CpG island 254
Tssr11683 1 54195189 to 54195211 22 - TSS region transcription start site region 11683
Gm25829 1 54249102 to 54249208 106 - snRNA gene predicted gene, 25829
Cpgi255 1 54250499 to 54250827 328 CpG island CpG island 255
Tssr11684 1 54250591 to 54250603 12 - TSS region transcription start site region 11684
Tssr6701 1 54250673 to 54250699 26 + TSS region transcription start site region 6701
Ccdc150 1 54250683 to 54368727 118044 + protein coding gene coiled-coil domain containing 150
Tssr6702 1 54250813 to 54250844 31 + TSS region transcription start site region 6702
Tssr6703 1 54329996 to 54330005 9 + TSS region transcription start site region 6703
Gtf3c3 1 54396004 to 54438971 42967 - protein coding gene general transcription factor IIIC, polypeptide 3
Tssr11685 1 54396945 to 54396951 6 - TSS region transcription start site region 11685
Cpgi256 1 54438751 to 54439143 392 CpG island CpG island 256
Tssr11686 1 54438940 to 54438994 54 - TSS region transcription start site region 11686
Tssr11687 1 54439003 to 54439014 11 - TSS region transcription start site region 11687
Gm34066 1 54442697 to 54447094 4397 - lincRNA gene predicted gene, 34066
Pgap1 1 54473000 to 54557684 84684 - protein coding gene post-GPI attachment to proteins 1
Tssr11688 1 54483166 to 54483171 5 - TSS region transcription start site region 11688
Tssr11689 1 54484818 to 54484842 24 - TSS region transcription start site region 11689
Gm36955 1 54518610 to 54520270 1660 - unclassified gene predicted gene, 36955
Cpgi257 1 54557174 to 54558112 938 CpG island CpG island 257
Tssr11690 1 54557595 to 54557698 103 - TSS region transcription start site region 11690
Gm19637 1 54566703 to 54567281 578 + pseudogene predicted gene, 19637
Tssr86 1 54583871 to 54583880 9 + TSS region transcription start site region 86
Tssr11691 1 54585190 to 54585214 24 - TSS region transcription start site region 11691
Tssr11692 1 54585451 to 54585463 12 - TSS region transcription start site region 11692
Tssr6704 1 54585733 to 54585765 32 + TSS region transcription start site region 6704
Ankrd44 1 54645340 to 54926387 281047 - protein coding gene ankyrin repeat domain 44
4930444A19Rik 1 54681198 to 54766354 85156 + antisense lncRNA gene RIKEN cDNA 4930444A19 gene
Tssr6705 1 54681760 to 54681770 10 + TSS region transcription start site region 6705
Tssr11693 1 54716862 to 54716868 6 - TSS region transcription start site region 11693
Tssr11694 1 54732715 to 54732719 4 - TSS region transcription start site region 11694
Gm37370 1 54737166 to 54738575 1409 - unclassified gene predicted gene, 37370
Aec2 1 182423027 to 52418578 -130004449 QTL autoimmune exocrinopathy 2