Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:52209436-52679544

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gls 1 52163448 to 52233232 69784 - protein coding gene glutaminase
Cpgi242 1 52231932 to 52233715 1783 CpG island CpG island 242
Tssr11598 1 52232401 to 52232432 31 - TSS region transcription start site region 11598
Tssr11599 1 52232981 to 52232998 17 - TSS region transcription start site region 11599
Tssr11600 1 52233006 to 52233032 26 - TSS region transcription start site region 11600
Tssr11601 1 52233075 to 52233097 22 - TSS region transcription start site region 11601
Tssr11602 1 52233211 to 52233229 18 - TSS region transcription start site region 11602
Gm31867 1 52249320 to 52258151 8831 - lncRNA gene predicted gene, 31867
D1Ncl3 1 52249775 to 52249960 185 DNA segment DNA segment, Chr 1, Nicolas C. Levy 3
Gm5975 1 52287721 to 52289095 1374 - pseudogene predicted gene 5975
Gm31955 1 52305615 to 52367667 62052 + lncRNA gene predicted gene, 31955
D1Mit18 1 52418578 to 52418733 155 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 18
Gm23460 1 52444436 to 52444544 108 - snRNA gene predicted gene, 23460
Nab1 1 52457294 to 52500679 43385 - protein coding gene Ngfi-A binding protein 1
Tssr11603 1 52472933 to 52472937 4 - TSS region transcription start site region 11603
Tssr11604 1 52498942 to 52498945 3 - TSS region transcription start site region 11604
Cpgi243 1 52499688 to 52501030 1342 CpG island CpG island 243
Tssr6674 1 52500009 to 52500071 62 + TSS region transcription start site region 6674
Tssr11605 1 52500236 to 52500276 40 - TSS region transcription start site region 11605
Tssr11606 1 52500353 to 52500449 96 - TSS region transcription start site region 11606
Tssr6675 1 52500648 to 52500651 3 + TSS region transcription start site region 6675
Gm5976 1 52503234 to 52504229 995 - pseudogene predicted gene 5976
Tssr11607 1 52504299 to 52504300 1 - TSS region transcription start site region 11607
Gm553 1 52504495 to 52520703 16208 + lincRNA gene predicted gene 553
Rps27a-ps1 1 52522239 to 52522701 462 + pseudogene ribosomal protein S27A, pseudogene 1
Tssr6676 1 52568476 to 52568487 11 + TSS region transcription start site region 6676
Tssr6677 1 52568495 to 52568504 9 + TSS region transcription start site region 6677
Gm28178 1 52570014 to 52580291 10277 - lincRNA gene predicted gene 28178
Gm5527 1 52584518 to 52585159 641 + pseudogene predicted gene 5527
Cpgi244 1 52597874 to 52598175 301 CpG island CpG island 244
Cpgi245 1 52630490 to 52631084 594 CpG island CpG island 245
Tssr6678 1 52630692 to 52630757 65 + TSS region transcription start site region 6678
Nemp2 1 52630703 to 52651919 21216 + protein coding gene nuclear envelope integral membrane protein 2
Tssr6679 1 52637508 to 52637513 5 + TSS region transcription start site region 6679
Gm37242 1 52653808 to 52655892 2084 - unclassified gene predicted gene, 37242
Tssr6680 1 52655527 to 52655532 5 + TSS region transcription start site region 6680
Mfsd6 1 52656299 to 52727462 71163 - protein coding gene major facilitator superfamily domain containing 6
Tssr11608 1 52658238 to 52658262 24 - TSS region transcription start site region 11608
Tssr11609 1 52658277 to 52658296 19 - TSS region transcription start site region 11609
Tssr11610 1 52661001 to 52661043 42 - TSS region transcription start site region 11610
Aec2 1 182423027 to 52418578 -130004449 QTL autoimmune exocrinopathy 2