Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:52061299-53322462

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stat4 1 51987148 to 52107189 120041 + protein coding gene signal transducer and activator of transcription 4
Gm28177 1 52077261 to 52156087 78826 + unclassified non-coding RNA gene predicted gene 28177
Gm3940 1 52090635 to 52091066 431 - pseudogene predicted gene 3940
Tssr11589 1 52091066 to 52091078 12 - TSS region transcription start site region 11589
Gm31812 1 52108121 to 52113751 5630 - lincRNA gene predicted gene, 31812
Cpgi240 1 52113520 to 52114017 497 CpG island CpG island 240
Cpgi241 1 52119228 to 52120063 835 CpG island CpG island 241
Stat1 1 52119440 to 52161865 42425 + protein coding gene signal transducer and activator of transcription 1
Tssr6645 1 52119471 to 52119499 28 + TSS region transcription start site region 6645
Tssr6646 1 52119534 to 52119557 23 + TSS region transcription start site region 6646
Tssr6647 1 52119562 to 52119589 27 + TSS region transcription start site region 6647
Tssr81 1 52119873 to 52119896 23 + TSS region transcription start site region 81
Tssr6648 1 52119896 to 52119935 39 + TSS region transcription start site region 6648
Tssr6649 1 52123109 to 52123233 124 + TSS region transcription start site region 6649
Tssr6650 1 52126508 to 52126565 57 + TSS region transcription start site region 6650
Tssr6651 1 52127731 to 52127744 13 + TSS region transcription start site region 6651
Tssr6652 1 52132546 to 52132561 15 + TSS region transcription start site region 6652
Tssr6653 1 52132588 to 52132599 11 + TSS region transcription start site region 6653
Gm18301 1 52134443 to 52135330 887 - pseudogene predicted gene, 18301
Tssr6654 1 52137386 to 52137402 16 + TSS region transcription start site region 6654
Tssr6655 1 52139247 to 52139268 21 + TSS region transcription start site region 6655
Tssr6656 1 52139274 to 52139294 20 + TSS region transcription start site region 6656
Tssr11590 1 52140428 to 52140432 4 - TSS region transcription start site region 11590
Tssr6657 1 52148896 to 52148924 28 + TSS region transcription start site region 6657
Tssr6658 1 52150610 to 52150645 35 + TSS region transcription start site region 6658
Tssr6659 1 52150848 to 52150858 10 + TSS region transcription start site region 6659
Tssr6660 1 52150934 to 52150944 10 + TSS region transcription start site region 6660
Tssr6661 1 52151006 to 52151017 11 + TSS region transcription start site region 6661
Tssr6662 1 52152291 to 52152303 12 + TSS region transcription start site region 6662
Tssr6663 1 52152325 to 52152343 18 + TSS region transcription start site region 6663
Tssr6664 1 52152351 to 52152358 7 + TSS region transcription start site region 6664
Tssr6665 1 52153835 to 52153850 15 + TSS region transcription start site region 6665
Tssr6666 1 52155097 to 52155112 15 + TSS region transcription start site region 6666
Tssr6667 1 52155114 to 52155131 17 + TSS region transcription start site region 6667
Tssr6668 1 52155137 to 52155162 25 + TSS region transcription start site region 6668
Tssr6669 1 52155198 to 52155217 19 + TSS region transcription start site region 6669
Tssr6670 1 52155218 to 52155252 34 + TSS region transcription start site region 6670
Tssr6671 1 52155283 to 52155312 29 + TSS region transcription start site region 6671
Tssr6672 1 52155341 to 52155359 18 + TSS region transcription start site region 6672
Tssr11591 1 52155367 to 52155379 12 - TSS region transcription start site region 11591
Tssr11592 1 52155401 to 52155412 11 - TSS region transcription start site region 11592
Gls 1 52163448 to 52233232 69784 - protein coding gene glutaminase
Tssr11593 1 52164663 to 52164679 16 - TSS region transcription start site region 11593
Tssr11594 1 52164713 to 52164724 11 - TSS region transcription start site region 11594
Tssr11595 1 52164838 to 52164859 21 - TSS region transcription start site region 11595
D1Ncl2 1 52175927 to 52176086 159 DNA segment DNA segment, Chr 1, Nicolas C. Levy 2
Tssr6673 1 52177376 to 52177378 2 + TSS region transcription start site region 6673
Tssr11596 1 52190901 to 52190915 14 - TSS region transcription start site region 11596
Tssr11597 1 52190929 to 52190931 2 - TSS region transcription start site region 11597
Cpgi242 1 52231932 to 52233715 1783 CpG island CpG island 242
Tssr11598 1 52232401 to 52232432 31 - TSS region transcription start site region 11598
Tssr11599 1 52232981 to 52232998 17 - TSS region transcription start site region 11599
Tssr11600 1 52233006 to 52233032 26 - TSS region transcription start site region 11600
Tssr11601 1 52233075 to 52233097 22 - TSS region transcription start site region 11601
Tssr11602 1 52233211 to 52233229 18 - TSS region transcription start site region 11602
Gm31867 1 52249320 to 52258151 8831 - lncRNA gene predicted gene, 31867
D1Ncl3 1 52249775 to 52249960 185 DNA segment DNA segment, Chr 1, Nicolas C. Levy 3
Gm5975 1 52287721 to 52289095 1374 - pseudogene predicted gene 5975
Gm31955 1 52305615 to 52367667 62052 + lncRNA gene predicted gene, 31955
D1Mit18 1 52418578 to 52418733 155 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 18
Gm23460 1 52444436 to 52444544 108 - snRNA gene predicted gene, 23460
Nab1 1 52457294 to 52500679 43385 - protein coding gene Ngfi-A binding protein 1
Tssr11603 1 52472933 to 52472937 4 - TSS region transcription start site region 11603
Tssr11604 1 52498942 to 52498945 3 - TSS region transcription start site region 11604
Cpgi243 1 52499688 to 52501030 1342 CpG island CpG island 243
Tssr6674 1 52500009 to 52500071 62 + TSS region transcription start site region 6674
Tssr11605 1 52500236 to 52500276 40 - TSS region transcription start site region 11605
Tssr11606 1 52500353 to 52500449 96 - TSS region transcription start site region 11606
Tssr6675 1 52500648 to 52500651 3 + TSS region transcription start site region 6675
Gm5976 1 52503234 to 52504229 995 - pseudogene predicted gene 5976
Tssr11607 1 52504299 to 52504300 1 - TSS region transcription start site region 11607
Gm553 1 52504495 to 52520703 16208 + lincRNA gene predicted gene 553
Rps27a-ps1 1 52522239 to 52522701 462 + pseudogene ribosomal protein S27A, pseudogene 1
Tssr6676 1 52568476 to 52568487 11 + TSS region transcription start site region 6676
Tssr6677 1 52568495 to 52568504 9 + TSS region transcription start site region 6677
Gm28178 1 52570014 to 52580291 10277 - lincRNA gene predicted gene 28178
Gm5527 1 52584518 to 52585159 641 + pseudogene predicted gene 5527
Cpgi244 1 52597874 to 52598175 301 CpG island CpG island 244
Cpgi245 1 52630490 to 52631084 594 CpG island CpG island 245
Tssr6678 1 52630692 to 52630757 65 + TSS region transcription start site region 6678
Nemp2 1 52630703 to 52651919 21216 + protein coding gene nuclear envelope integral membrane protein 2
Tssr6679 1 52637508 to 52637513 5 + TSS region transcription start site region 6679
Gm37242 1 52653808 to 52655892 2084 - unclassified gene predicted gene, 37242
Tssr6680 1 52655527 to 52655532 5 + TSS region transcription start site region 6680
Mfsd6 1 52656299 to 52727462 71163 - protein coding gene major facilitator superfamily domain containing 6
Tssr11608 1 52658238 to 52658262 24 - TSS region transcription start site region 11608
Tssr11609 1 52658277 to 52658296 19 - TSS region transcription start site region 11609
Tssr11610 1 52661001 to 52661043 42 - TSS region transcription start site region 11610
Tssr6681 1 52684730 to 52684735 5 + TSS region transcription start site region 6681
Gm29670 1 52702272 to 52704762 2490 - sense intronic lncRNA gene predicted gene 29670
Cpgi246 1 52726359 to 52727727 1368 CpG island CpG island 246
Tssr11611 1 52726798 to 52726820 22 - TSS region transcription start site region 11611
Tssr11612 1 52726824 to 52726870 46 - TSS region transcription start site region 11612
Tssr11613 1 52727127 to 52727161 34 - TSS region transcription start site region 11613
Tssr11614 1 52727255 to 52727268 13 - TSS region transcription start site region 11614
Tssr11615 1 52727296 to 52727382 86 - TSS region transcription start site region 11615
Tssr11616 1 52727457 to 52727474 17 - TSS region transcription start site region 11616
Tssr11617 1 52734294 to 52734310 16 - TSS region transcription start site region 11617
Gm28650 1 52756719 to 52757129 410 + pseudogene predicted gene 28650
Inpp1 1 52785427 to 52817688 32261 - protein coding gene inositol polyphosphate-1-phosphatase
Tssr11618 1 52794926 to 52794930 4 - TSS region transcription start site region 11618
Tssr11619 1 52799485 to 52799518 33 - TSS region transcription start site region 11619
Tssr11620 1 52799519 to 52799533 14 - TSS region transcription start site region 11620
Tssr11621 1 52799542 to 52799562 20 - TSS region transcription start site region 11621
Tssr11622 1 52800388 to 52800405 17 - TSS region transcription start site region 11622
Tssr11623 1 52800418 to 52800448 30 - TSS region transcription start site region 11623
Cpgi247 1 52817050 to 52817938 888 CpG island CpG island 247
Tssr11624 1 52817441 to 52817477 36 - TSS region transcription start site region 11624
Tssr11625 1 52817503 to 52817583 80 - TSS region transcription start site region 11625
Tssr11626 1 52817643 to 52817693 50 - TSS region transcription start site region 11626
Tssr11627 1 52817695 to 52817736 41 - TSS region transcription start site region 11627
Tssr11628 1 52817738 to 52817778 40 - TSS region transcription start site region 11628
Tssr11629 1 52817796 to 52817823 27 - TSS region transcription start site region 11629
Cpgi248 1 52844793 to 52845392 599 CpG island CpG island 248
Tssr6682 1 52845032 to 52845062 30 + TSS region transcription start site region 6682
Hibch 1 52845038 to 52920986 75948 + protein coding gene 3-hydroxyisobutyryl-Coenzyme A hydrolase
Tssr6683 1 52845071 to 52845094 23 + TSS region transcription start site region 6683
Tssr6684 1 52845099 to 52845110 11 + TSS region transcription start site region 6684
Tssr6685 1 52845115 to 52845123 8 + TSS region transcription start site region 6685
Gm16107 1 52873137 to 52873998 861 - pseudogene predicted gene 16107
1700019D03Rik 1 52922320 to 52991340 69020 - protein coding gene RIKEN cDNA 1700019D03 gene
Tssr82 1 52934561 to 52934563 2 + TSS region transcription start site region 82
Tssr11630 1 52947987 to 52948009 22 - TSS region transcription start site region 11630
Tssr11631 1 52948011 to 52948018 7 - TSS region transcription start site region 11631
Cpgi249 1 52952541 to 52953430 889 CpG island CpG island 249
Tssr11632 1 52952681 to 52952709 28 - TSS region transcription start site region 11632
Tssr11633 1 52952804 to 52952826 22 - TSS region transcription start site region 11633
Tssr11634 1 52952834 to 52952854 20 - TSS region transcription start site region 11634
Tssr11635 1 52953116 to 52953156 40 - TSS region transcription start site region 11635
Tssr11636 1 52953179 to 52953224 45 - TSS region transcription start site region 11636
Tssr11637 1 52953596 to 52953627 31 - TSS region transcription start site region 11637
Tssr11638 1 52963223 to 52963234 11 - TSS region transcription start site region 11638
Tssr11639 1 52963250 to 52963266 16 - TSS region transcription start site region 11639
Tssr11640 1 52963268 to 52963269 1 - TSS region transcription start site region 11640
Tssr11641 1 52963278 to 52963292 14 - TSS region transcription start site region 11641
Tssr11642 1 52972014 to 52972021 7 - TSS region transcription start site region 11642
Tssr11643 1 52972028 to 52972051 23 - TSS region transcription start site region 11643
Tssr11644 1 52992679 to 52992688 9 - TSS region transcription start site region 11644
D1Mit545 1 53004763 to 53004886 123 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 545
Tssr6686 1 53061637 to 53061642 5 + TSS region transcription start site region 6686
Mstn 1 53061640 to 53068079 6439 + protein coding gene myostatin
Gm24349 1 53100050 to 53100150 100 + snoRNA gene predicted gene, 24349
1700019A02Rik 1 53158577 to 53187636 29059 - protein coding gene RIKEN cDNA 1700019A02 gene
Tssr11645 1 53187596 to 53187635 39 - TSS region transcription start site region 11645
Pms1 1 53189187 to 53297018 107831 - protein coding gene PMS1 homolog 1, mismatch repair system component
Gm28777 1 53196113 to 53197695 1582 + antisense lncRNA gene predicted gene 28777
Cpgi250 1 53296620 to 53297445 825 CpG island CpG island 250
Tssr11646 1 53296958 to 53296997 39 - TSS region transcription start site region 11646
Tssr11647 1 53297001 to 53297023 22 - TSS region transcription start site region 11647
Tssr6687 1 53297070 to 53297094 24 + TSS region transcription start site region 6687
Ormdl1 1 53297095 to 53310245 13150 + protein coding gene ORM1-like 1 (S. cerevisiae)
Tssr6688 1 53297096 to 53297124 28 + TSS region transcription start site region 6688
Gm28778 1 53297111 to 53318035 20924 + protein coding gene predicted gene 28778
Tssr6689 1 53297147 to 53297156 9 + TSS region transcription start site region 6689
Tssr6690 1 53313622 to 53313635 13 + TSS region transcription start site region 6690
Osgepl1 1 53313624 to 53326343 12719 + protein coding gene O-sialoglycoprotein endopeptidase-like 1
Tssr6691 1 53313636 to 53313682 46 + TSS region transcription start site region 6691
Tssr6692 1 53313692 to 53313701 9 + TSS region transcription start site region 6692
Tssr83 1 53313743 to 53313748 5 + TSS region transcription start site region 83
Aec2 1 182423027 to 52418578 -130004449 QTL autoimmune exocrinopathy 2