Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:51852123-52122132

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Habiir1 1 45378613 to 51924960 6546347 QTL hyperoxic acute lung injury imprinted region 1
Myo1b 1 51749758 to 51915978 166220 - protein coding gene myosin IB
Tssr11580 1 51852820 to 51852824 4 - TSS region transcription start site region 11580
Tssr11581 1 51858083 to 51858089 6 - TSS region transcription start site region 11581
Gm28323 1 51877110 to 51879608 2498 - sense intronic lncRNA gene predicted gene 28323
Tssr11582 1 51879421 to 51879446 25 - TSS region transcription start site region 11582
Tssr11583 1 51896022 to 51896031 9 - TSS region transcription start site region 11583
Tssr11584 1 51896035 to 51896045 10 - TSS region transcription start site region 11584
Tssr11585 1 51896067 to 51896083 16 - TSS region transcription start site region 11585
Cpgi239 1 51914983 to 51916523 1540 CpG island CpG island 239
Tssr11586 1 51915901 to 51915958 57 - TSS region transcription start site region 11586
Tssr11587 1 51915968 to 51915978 10 - TSS region transcription start site region 11587
Gm33795 1 51916287 to 51919988 3701 + lncRNA gene predicted gene, 33795
D1Mit478 1 51924866 to 51924960 94 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 478
Shali1 1 51924866 to 70367430 18442564 QTL survival time to hyperoxic acute lung injury 1
Gm8419 1 51938254 to 51938665 411 - pseudogene predicted gene 8419
Gm27607 1 51938974 to 51939095 121 - snoRNA gene predicted gene, 27607
Gm8420 1 51940664 to 51941261 597 - pseudogene predicted gene 8420
Tssr11588 1 51941289 to 51941302 13 - TSS region transcription start site region 11588
Tssr6638 1 51987123 to 51987132 9 + TSS region transcription start site region 6638
Tssr6639 1 51987139 to 51987151 12 + TSS region transcription start site region 6639
Stat4 1 51987148 to 52107189 120041 + protein coding gene signal transducer and activator of transcription 4
Tssr6640 1 52008210 to 52008254 44 + TSS region transcription start site region 6640
Tssr6641 1 52008262 to 52008280 18 + TSS region transcription start site region 6641
Tssr6642 1 52008610 to 52008651 41 + TSS region transcription start site region 6642
Tssr6643 1 52008664 to 52008678 14 + TSS region transcription start site region 6643
Tssr6644 1 52008686 to 52008704 18 + TSS region transcription start site region 6644
Gm28177 1 52077261 to 52156087 78826 + unclassified non-coding RNA gene predicted gene 28177
Gm3940 1 52090635 to 52091066 431 - pseudogene predicted gene 3940
Tssr11589 1 52091066 to 52091078 12 - TSS region transcription start site region 11589
Gm31812 1 52108121 to 52113751 5630 - lincRNA gene predicted gene, 31812
Cpgi240 1 52113520 to 52114017 497 CpG island CpG island 240
Cpgi241 1 52119228 to 52120063 835 CpG island CpG island 241
Stat1 1 52119440 to 52161865 42425 + protein coding gene signal transducer and activator of transcription 1
Tssr6645 1 52119471 to 52119499 28 + TSS region transcription start site region 6645
Tssr6646 1 52119534 to 52119557 23 + TSS region transcription start site region 6646
Tssr6647 1 52119562 to 52119589 27 + TSS region transcription start site region 6647
Tssr81 1 52119873 to 52119896 23 + TSS region transcription start site region 81
Tssr6648 1 52119896 to 52119935 39 + TSS region transcription start site region 6648