Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:51119758-52545978

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Habiir1 1 45378613 to 51924960 6546347 QTL hyperoxic acute lung injury imprinted region 1
Tmeff2 1 50927523 to 51187270 259747 + protein coding gene transmembrane protein with EGF-like and two follistatin-like domains 2
Gm28319 1 51138281 to 51141222 2941 - antisense lncRNA gene predicted gene 28319
Gm28320 1 51148309 to 51150581 2272 + sense intronic lncRNA gene predicted gene 28320
Gm29325 1 51195221 to 51197748 2527 + lincRNA gene predicted gene 29325
9330175M20Rik 1 51218386 to 51333779 115393 - antisense lncRNA gene RIKEN cDNA 9330175M20 gene
Tssr80 1 51250064 to 51250080 16 - TSS region transcription start site region 80
Tssr6622 1 51289106 to 51289142 36 + TSS region transcription start site region 6622
Cavin2 1 51289126 to 51302960 13834 + protein coding gene caveolae associated 2
Tssr6623 1 51289245 to 51289279 34 + TSS region transcription start site region 6623
Tssr6624 1 51289285 to 51289315 30 + TSS region transcription start site region 6624
Tssr6625 1 51289361 to 51289370 9 + TSS region transcription start site region 6625
Cpgi236 1 51289523 to 51289920 397 CpG island CpG island 236
Gm5253 1 51317531 to 51318552 1021 - pseudogene predicted gene 5253
D1Mit323 1 51386279 to 51386441 162 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 323
Cpgi237 1 51426594 to 51426789 195 CpG island CpG island 237
1700072G22Rik 1 51457932 to 51458931 999 - lincRNA gene RIKEN cDNA 1700072G22 gene
Nabp1 1 51465862 to 51478425 12563 - protein coding gene nucleic acid binding protein 1
Tssr11563 1 51466107 to 51466115 8 - TSS region transcription start site region 11563
Tssr11564 1 51473425 to 51473467 42 - TSS region transcription start site region 11564
Tssr11565 1 51473943 to 51473978 35 - TSS region transcription start site region 11565
Tssr11566 1 51474017 to 51474046 29 - TSS region transcription start site region 11566
Tssr11567 1 51475335 to 51475349 14 - TSS region transcription start site region 11567
Tssr6626 1 51476655 to 51476687 32 + TSS region transcription start site region 6626
Tssr11568 1 51477712 to 51477730 18 - TSS region transcription start site region 11568
Cpgi238 1 51477749 to 51478913 1164 CpG island CpG island 238
Tssr11569 1 51477911 to 51477923 12 - TSS region transcription start site region 11569
Tssr11570 1 51478123 to 51478131 8 - TSS region transcription start site region 11570
Tssr11571 1 51478390 to 51478406 16 - TSS region transcription start site region 11571
Tssr6627 1 51478514 to 51478522 8 + TSS region transcription start site region 6627
Tssr6628 1 51478624 to 51478652 28 + TSS region transcription start site region 6628
Tssr6629 1 51478661 to 51478680 19 + TSS region transcription start site region 6629
Tssr11572 1 51513031 to 51513033 2 - TSS region transcription start site region 11572
Tssr11573 1 51513172 to 51513183 11 - TSS region transcription start site region 11573
Gm37535 1 51527005 to 51529369 2364 - unclassified gene predicted gene, 37535
Tssr6630 1 51566530 to 51566551 21 + TSS region transcription start site region 6630
Tssr6631 1 51566573 to 51566599 26 + TSS region transcription start site region 6631
Tssr11574 1 51572795 to 51572807 12 - TSS region transcription start site region 11574
Gm17767 1 51582167 to 51607520 25353 - lincRNA gene predicted gene, 17767
Tssr11575 1 51584971 to 51584991 20 - TSS region transcription start site region 11575
Tssr11576 1 51585262 to 51585267 5 - TSS region transcription start site region 11576
Tssr6632 1 51585352 to 51585387 35 + TSS region transcription start site region 6632
Tssr6633 1 51585413 to 51585438 25 + TSS region transcription start site region 6633
Tssr6634 1 51593993 to 51593998 5 + TSS region transcription start site region 6634
Tssr6635 1 51594170 to 51594184 14 + TSS region transcription start site region 6635
Tssr6636 1 51594248 to 51594251 3 + TSS region transcription start site region 6636
Gm31636 1 51622474 to 51645946 23472 + lncRNA gene predicted gene, 31636
Tssr11577 1 51624401 to 51624410 9 - TSS region transcription start site region 11577
Gm28055 1 51696324 to 51746943 50619 - lincRNA gene predicted gene 28055
Tssr11578 1 51747054 to 51747070 16 - TSS region transcription start site region 11578
Tssr6637 1 51747098 to 51747127 29 + TSS region transcription start site region 6637
Myo1b 1 51749758 to 51915978 166220 - protein coding gene myosin IB
Tssr11579 1 51797029 to 51797071 42 - TSS region transcription start site region 11579
Gm29453 1 51847840 to 51849118 1278 - sense intronic lncRNA gene predicted gene 29453
Tssr11580 1 51852820 to 51852824 4 - TSS region transcription start site region 11580
Tssr11581 1 51858083 to 51858089 6 - TSS region transcription start site region 11581
Gm28323 1 51877110 to 51879608 2498 - sense intronic lncRNA gene predicted gene 28323
Tssr11582 1 51879421 to 51879446 25 - TSS region transcription start site region 11582
Tssr11583 1 51896022 to 51896031 9 - TSS region transcription start site region 11583
Tssr11584 1 51896035 to 51896045 10 - TSS region transcription start site region 11584
Tssr11585 1 51896067 to 51896083 16 - TSS region transcription start site region 11585
Cpgi239 1 51914983 to 51916523 1540 CpG island CpG island 239
Tssr11586 1 51915901 to 51915958 57 - TSS region transcription start site region 11586
Tssr11587 1 51915968 to 51915978 10 - TSS region transcription start site region 11587
Gm33795 1 51916287 to 51919988 3701 + lncRNA gene predicted gene, 33795
Shali1 1 51924866 to 70367430 18442564 QTL survival time to hyperoxic acute lung injury 1
D1Mit478 1 51924866 to 51924960 94 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 478
Gm8419 1 51938254 to 51938665 411 - pseudogene predicted gene 8419
Gm27607 1 51938974 to 51939095 121 - snoRNA gene predicted gene, 27607
Gm8420 1 51940664 to 51941261 597 - pseudogene predicted gene 8420
Tssr11588 1 51941289 to 51941302 13 - TSS region transcription start site region 11588
Tssr6638 1 51987123 to 51987132 9 + TSS region transcription start site region 6638
Tssr6639 1 51987139 to 51987151 12 + TSS region transcription start site region 6639
Stat4 1 51987148 to 52107189 120041 + protein coding gene signal transducer and activator of transcription 4
Tssr6640 1 52008210 to 52008254 44 + TSS region transcription start site region 6640
Tssr6641 1 52008262 to 52008280 18 + TSS region transcription start site region 6641
Tssr6642 1 52008610 to 52008651 41 + TSS region transcription start site region 6642
Tssr6643 1 52008664 to 52008678 14 + TSS region transcription start site region 6643
Tssr6644 1 52008686 to 52008704 18 + TSS region transcription start site region 6644
Gm28177 1 52077261 to 52156087 78826 + unclassified non-coding RNA gene predicted gene 28177
Gm3940 1 52090635 to 52091066 431 - pseudogene predicted gene 3940
Tssr11589 1 52091066 to 52091078 12 - TSS region transcription start site region 11589
Gm31812 1 52108121 to 52113751 5630 - lincRNA gene predicted gene, 31812
Cpgi240 1 52113520 to 52114017 497 CpG island CpG island 240
Cpgi241 1 52119228 to 52120063 835 CpG island CpG island 241
Stat1 1 52119440 to 52161865 42425 + protein coding gene signal transducer and activator of transcription 1
Tssr6645 1 52119471 to 52119499 28 + TSS region transcription start site region 6645
Tssr6646 1 52119534 to 52119557 23 + TSS region transcription start site region 6646
Tssr6647 1 52119562 to 52119589 27 + TSS region transcription start site region 6647
Tssr81 1 52119873 to 52119896 23 + TSS region transcription start site region 81
Tssr6648 1 52119896 to 52119935 39 + TSS region transcription start site region 6648
Tssr6649 1 52123109 to 52123233 124 + TSS region transcription start site region 6649
Tssr6650 1 52126508 to 52126565 57 + TSS region transcription start site region 6650
Tssr6651 1 52127731 to 52127744 13 + TSS region transcription start site region 6651
Tssr6652 1 52132546 to 52132561 15 + TSS region transcription start site region 6652
Tssr6653 1 52132588 to 52132599 11 + TSS region transcription start site region 6653
Gm18301 1 52134443 to 52135330 887 - pseudogene predicted gene, 18301
Tssr6654 1 52137386 to 52137402 16 + TSS region transcription start site region 6654
Tssr6655 1 52139247 to 52139268 21 + TSS region transcription start site region 6655
Tssr6656 1 52139274 to 52139294 20 + TSS region transcription start site region 6656
Tssr11590 1 52140428 to 52140432 4 - TSS region transcription start site region 11590
Tssr6657 1 52148896 to 52148924 28 + TSS region transcription start site region 6657
Tssr6658 1 52150610 to 52150645 35 + TSS region transcription start site region 6658
Tssr6659 1 52150848 to 52150858 10 + TSS region transcription start site region 6659
Tssr6660 1 52150934 to 52150944 10 + TSS region transcription start site region 6660
Tssr6661 1 52151006 to 52151017 11 + TSS region transcription start site region 6661
Tssr6662 1 52152291 to 52152303 12 + TSS region transcription start site region 6662
Tssr6663 1 52152325 to 52152343 18 + TSS region transcription start site region 6663
Tssr6664 1 52152351 to 52152358 7 + TSS region transcription start site region 6664
Tssr6665 1 52153835 to 52153850 15 + TSS region transcription start site region 6665
Tssr6666 1 52155097 to 52155112 15 + TSS region transcription start site region 6666
Tssr6667 1 52155114 to 52155131 17 + TSS region transcription start site region 6667
Tssr6668 1 52155137 to 52155162 25 + TSS region transcription start site region 6668
Tssr6669 1 52155198 to 52155217 19 + TSS region transcription start site region 6669
Tssr6670 1 52155218 to 52155252 34 + TSS region transcription start site region 6670
Tssr6671 1 52155283 to 52155312 29 + TSS region transcription start site region 6671
Tssr6672 1 52155341 to 52155359 18 + TSS region transcription start site region 6672
Tssr11591 1 52155367 to 52155379 12 - TSS region transcription start site region 11591
Tssr11592 1 52155401 to 52155412 11 - TSS region transcription start site region 11592
Gls 1 52163448 to 52233232 69784 - protein coding gene glutaminase
Tssr11593 1 52164663 to 52164679 16 - TSS region transcription start site region 11593
Tssr11594 1 52164713 to 52164724 11 - TSS region transcription start site region 11594
Tssr11595 1 52164838 to 52164859 21 - TSS region transcription start site region 11595
D1Ncl2 1 52175927 to 52176086 159 DNA segment DNA segment, Chr 1, Nicolas C. Levy 2
Tssr6673 1 52177376 to 52177378 2 + TSS region transcription start site region 6673
Tssr11596 1 52190901 to 52190915 14 - TSS region transcription start site region 11596
Tssr11597 1 52190929 to 52190931 2 - TSS region transcription start site region 11597
Cpgi242 1 52231932 to 52233715 1783 CpG island CpG island 242
Tssr11598 1 52232401 to 52232432 31 - TSS region transcription start site region 11598
Tssr11599 1 52232981 to 52232998 17 - TSS region transcription start site region 11599
Tssr11600 1 52233006 to 52233032 26 - TSS region transcription start site region 11600
Tssr11601 1 52233075 to 52233097 22 - TSS region transcription start site region 11601
Tssr11602 1 52233211 to 52233229 18 - TSS region transcription start site region 11602
Gm31867 1 52249320 to 52258151 8831 - lncRNA gene predicted gene, 31867
D1Ncl3 1 52249775 to 52249960 185 DNA segment DNA segment, Chr 1, Nicolas C. Levy 3
Gm5975 1 52287721 to 52289095 1374 - pseudogene predicted gene 5975
Gm31955 1 52305615 to 52367667 62052 + lncRNA gene predicted gene, 31955
D1Mit18 1 52418578 to 52418733 155 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 18
Gm23460 1 52444436 to 52444544 108 - snRNA gene predicted gene, 23460
Nab1 1 52457294 to 52500679 43385 - protein coding gene Ngfi-A binding protein 1
Tssr11603 1 52472933 to 52472937 4 - TSS region transcription start site region 11603
Tssr11604 1 52498942 to 52498945 3 - TSS region transcription start site region 11604
Cpgi243 1 52499688 to 52501030 1342 CpG island CpG island 243
Tssr6674 1 52500009 to 52500071 62 + TSS region transcription start site region 6674
Tssr11605 1 52500236 to 52500276 40 - TSS region transcription start site region 11605
Tssr11606 1 52500353 to 52500449 96 - TSS region transcription start site region 11606
Tssr6675 1 52500648 to 52500651 3 + TSS region transcription start site region 6675
Gm5976 1 52503234 to 52504229 995 - pseudogene predicted gene 5976
Tssr11607 1 52504299 to 52504300 1 - TSS region transcription start site region 11607
Gm553 1 52504495 to 52520703 16208 + lincRNA gene predicted gene 553
Rps27a-ps1 1 52522239 to 52522701 462 + pseudogene ribosomal protein S27A, pseudogene 1
Aec2 1 182423027 to 52418578 -130004449 QTL autoimmune exocrinopathy 2