Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:50394444-51415918

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shm1 1 44147744 to 50777776 6630032 QTL sperm head morphology 1
Gm29665 1 50397552 to 50398079 527 - lincRNA gene predicted gene 29665
Gm20118 1 50533030 to 50533191 161 + pseudogene predicted gene, 20118
Gm25843 1 50559762 to 50560075 313 + unclassified non-coding RNA gene predicted gene, 25843
D1Mit528 1 50777691 to 50777776 85 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 528
Gm28321 1 50815375 to 50817701 2326 + lincRNA gene predicted gene 28321
Gm28322 1 50904444 to 50905918 1474 + lincRNA gene predicted gene 28322
Cpgi235 1 50926585 to 50928191 1606 CpG island CpG island 235
Tssr6619 1 50927497 to 50927506 9 + TSS region transcription start site region 6619
Tssr6620 1 50927511 to 50927543 32 + TSS region transcription start site region 6620
Tmeff2 1 50927523 to 51187270 259747 + protein coding gene transmembrane protein with EGF-like and two follistatin-like domains 2
Tssr79 1 50958688 to 50958691 3 + TSS region transcription start site region 79
Tssr11562 1 50981090 to 50981105 15 - TSS region transcription start site region 11562
Gm25736 1 51015313 to 51015413 100 + miRNA gene predicted gene, 25736
Tssr6621 1 51083515 to 51083518 3 + TSS region transcription start site region 6621
Gm28319 1 51138281 to 51141222 2941 - antisense lncRNA gene predicted gene 28319
Gm28320 1 51148309 to 51150581 2272 + sense intronic lncRNA gene predicted gene 28320
Gm29325 1 51195221 to 51197748 2527 + lincRNA gene predicted gene 29325
9330175M20Rik 1 51218386 to 51333779 115393 - antisense lncRNA gene RIKEN cDNA 9330175M20 gene
Tssr80 1 51250064 to 51250080 16 - TSS region transcription start site region 80
Tssr6622 1 51289106 to 51289142 36 + TSS region transcription start site region 6622
Cavin2 1 51289126 to 51302960 13834 + protein coding gene caveolae associated 2
Tssr6623 1 51289245 to 51289279 34 + TSS region transcription start site region 6623
Tssr6624 1 51289285 to 51289315 30 + TSS region transcription start site region 6624
Tssr6625 1 51289361 to 51289370 9 + TSS region transcription start site region 6625
Cpgi236 1 51289523 to 51289920 397 CpG island CpG island 236
Gm5253 1 51317531 to 51318552 1021 - pseudogene predicted gene 5253
D1Mit323 1 51386279 to 51386441 162 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 323