Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:4917739-5700017

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rgs20 1 4909576 to 5070285 160709 - protein coding gene regulator of G-protein signaling 20
Gm17100 1 4927028 to 4927299 271 - pseudogene predicted gene 17100
Gm37079 1 4938576 to 4940710 2134 - unclassified gene predicted gene, 37079
Gm16041 1 4970857 to 4976820 5963 + antisense lncRNA gene predicted gene 16041
Tssr10893 1 4972390 to 4972416 26 - TSS region transcription start site region 10893
Cpgi11 1 5018203 to 5021131 2928 CpG island CpG island 11
Tssr10894 1 5019342 to 5019397 55 - TSS region transcription start site region 10894
Tssr10895 1 5020299 to 5020336 37 - TSS region transcription start site region 10895
Cpgi12 1 5022819 to 5023058 239 CpG island CpG island 12
Cpgi13 1 5023502 to 5023833 331 CpG island CpG island 13
Gm17101 1 5063060 to 5064647 1587 + pseudogene predicted gene 17101
Tssr10896 1 5070281 to 5070288 7 - TSS region transcription start site region 10896
Tssr10897 1 5070293 to 5070304 11 - TSS region transcription start site region 10897
Tssr10898 1 5070305 to 5070314 9 - TSS region transcription start site region 10898
Tssr10899 1 5070336 to 5070338 2 - TSS region transcription start site region 10899
Cpgi14 1 5082921 to 5083542 621 CpG island CpG island 14
Atp6v1h 1 5082978 to 5163213 80235 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit H
Tssr5811 1 5083105 to 5083160 55 + TSS region transcription start site region 5811
Tssr5812 1 5083169 to 5083186 17 + TSS region transcription start site region 5812
Tssr5813 1 5083206 to 5083217 11 + TSS region transcription start site region 5813
Tssr1 1 5083521 to 5083530 9 + TSS region transcription start site region 1
Tssr5814 1 5083560 to 5083587 27 + TSS region transcription start site region 5814
Tssr10900 1 5084523 to 5084544 21 - TSS region transcription start site region 10900
Tssr5815 1 5094136 to 5094140 4 + TSS region transcription start site region 5815
Tssr5816 1 5098061 to 5098109 48 + TSS region transcription start site region 5816
Tssr5817 1 5105326 to 5105334 8 + TSS region transcription start site region 5817
Tssr5818 1 5115205 to 5115211 6 + TSS region transcription start site region 5818
Tssr5819 1 5139383 to 5139388 5 + TSS region transcription start site region 5819
B230334L07Rik 1 5156596 to 5158505 1909 unclassified gene RIKEN cDNA B230334L07 gene
Tssr10901 1 5170639 to 5170674 35 - TSS region transcription start site region 10901
Gm7182 1 5276110 to 5276798 688 - pseudogene predicted gene 7182
Gm37567 1 5307739 to 5310017 2278 + unclassified gene predicted gene, 37567
Gm19070 1 5319710 to 5320327 617 - pseudogene predicted gene, 19070
Gm38264 1 5403547 to 5405578 2031 + unclassified gene predicted gene, 38264
D1Mit474 1 5579697 to 5579843 146 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 474
Oprk1 1 5588466 to 5606131 17665 + protein coding gene opioid receptor, kappa 1
Gm36965 1 5617837 to 5618230 393 - pseudogene predicted gene, 36965
Tssr10902 1 5618200 to 5618211 11 - TSS region transcription start site region 10902
Gm22463 1 5644645 to 5644745 100 - miRNA gene predicted gene, 22463