Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:48038553-50958983

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shm1 1 44147744 to 50777776 6630032 QTL sperm head morphology 1
Gm5974 1 48313866 to 48314851 985 - pseudogene predicted gene 5974
Gm23240 1 48462173 to 48462293 120 - snRNA gene predicted gene, 23240
Tssr11559 1 48462292 to 48462293 1 - TSS region transcription start site region 11559
Gm28830 1 48527639 to 48527851 212 + pseudogene predicted gene 28830
Tssr78 1 48582684 to 48582689 5 + TSS region transcription start site region 78
D1Mit175 1 48583041 to 48583174 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 175
Tssr11560 1 48698693 to 48698699 6 - TSS region transcription start site region 11560
Gm8354 1 48731579 to 48733090 1511 - pseudogene predicted gene 8354
Gm19124 1 48783663 to 48784593 930 + pseudogene predicted gene, 19124
Gm8357 1 48881713 to 48882723 1010 + pseudogene predicted gene 8357
Gm19644 1 49003981 to 49004831 850 - pseudogene predicted gene, 19644
Gm22693 1 49095444 to 49095885 441 + miRNA gene predicted gene, 22693
D1Mit434 1 49106509 to 49106649 140 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 434
Gm28740 1 49173160 to 49173374 214 - pseudogene predicted gene 28740
Gm8367 1 49236223 to 49237008 785 + pseudogene predicted gene 8367
C230029F24Rik 1 49244616 to 49340431 95815 + lincRNA gene RIKEN cDNA C230029F24 gene
Gm6757 1 49399024 to 49400729 1705 - pseudogene predicted gene 6757
Tssr11561 1 49400787 to 49400799 12 - TSS region transcription start site region 11561
Gm3605 1 49498553 to 49498983 430 + pseudogene predicted gene 3605
D2Jpk1 1 49531286 to 49531433 147 DNA segment DNA segment, Chr 2, Japan, Kominami 1
Gm28388 1 49579150 to 49579586 436 - pseudogene predicted gene 28388
Gm8384 1 50056782 to 50058487 1705 + pseudogene predicted gene 8384
4933411E06Rik 1 50107470 to 50108962 1492 + lincRNA gene RIKEN cDNA 4933411E06 gene
Gm8391 1 50177569 to 50178291 722 - pseudogene predicted gene 8391
Gm27330 1 50222389 to 50222520 131 - unclassified non-coding RNA gene predicted gene, 27330
Gm39640 1 50297902 to 50322048 24146 - lncRNA gene predicted gene, 39640
Gm29665 1 50397552 to 50398079 527 - lincRNA gene predicted gene 29665
Gm20118 1 50533030 to 50533191 161 + pseudogene predicted gene, 20118
Gm25843 1 50559762 to 50560075 313 + unclassified non-coding RNA gene predicted gene, 25843
D1Mit528 1 50777691 to 50777776 85 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 528
Gm28321 1 50815375 to 50817701 2326 + lincRNA gene predicted gene 28321
Gm28322 1 50904444 to 50905918 1474 + lincRNA gene predicted gene 28322
Cpgi235 1 50926585 to 50928191 1606 CpG island CpG island 235
Tssr6619 1 50927497 to 50927506 9 + TSS region transcription start site region 6619
Tssr6620 1 50927511 to 50927543 32 + TSS region transcription start site region 6620
Tmeff2 1 50927523 to 51187270 259747 + protein coding gene transmembrane protein with EGF-like and two follistatin-like domains 2
Tssr79 1 50958688 to 50958691 3 + TSS region transcription start site region 79