Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:47136286-51926433

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shm1 1 44147744 to 50777776 6630032 QTL sperm head morphology 1
Habiir1 1 45378613 to 51924960 6546347 QTL hyperoxic acute lung injury imprinted region 1
Gm28826 1 47153461 to 47189071 35610 + lincRNA gene predicted gene 28826
AU014756 1 47190578 to 47191218 640 unclassified gene expressed sequence AU014756
Gm39638 1 47251863 to 47288100 36237 + lncRNA gene predicted gene, 39638
Gm4852 1 47365644 to 47366372 728 - pseudogene predicted pseudogene 4852
Gm39639 1 47433524 to 47461160 27636 + lncRNA gene predicted gene, 39639
Gm38090 1 47433824 to 47435765 1941 - unclassified gene predicted gene, 38090
Mir6350 1 47467021 to 47467125 104 - miRNA gene microRNA 6350
Gm18117 1 47479511 to 47480198 687 + pseudogene predicted gene, 18117
Gm37196 1 47605996 to 47606901 905 + unclassified gene predicted gene, 37196
Gm8337 1 47657693 to 47659630 1937 + pseudogene predicted gene 8337
Tssr77 1 47659352 to 47659356 4 + TSS region transcription start site region 77
Gm22419 1 47749279 to 47749399 120 - miRNA gene predicted gene, 22419
Gm23829 1 47751299 to 47751568 269 - unclassified non-coding RNA gene predicted gene, 23829
Gm19206 1 47915005 to 47915815 810 - pseudogene predicted gene, 19206
Tssr6618 1 47917438 to 47917443 5 + TSS region transcription start site region 6618
Gm5974 1 48313866 to 48314851 985 - pseudogene predicted gene 5974
Gm23240 1 48462173 to 48462293 120 - snRNA gene predicted gene, 23240
Tssr11559 1 48462292 to 48462293 1 - TSS region transcription start site region 11559
Gm28830 1 48527639 to 48527851 212 + pseudogene predicted gene 28830
Tssr78 1 48582684 to 48582689 5 + TSS region transcription start site region 78
D1Mit175 1 48583041 to 48583174 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 175
Tssr11560 1 48698693 to 48698699 6 - TSS region transcription start site region 11560
Gm8354 1 48731579 to 48733090 1511 - pseudogene predicted gene 8354
Gm19124 1 48783663 to 48784593 930 + pseudogene predicted gene, 19124
Gm8357 1 48881713 to 48882723 1010 + pseudogene predicted gene 8357
Gm19644 1 49003981 to 49004831 850 - pseudogene predicted gene, 19644
Gm22693 1 49095444 to 49095885 441 + miRNA gene predicted gene, 22693
D1Mit434 1 49106509 to 49106649 140 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 434
Gm28740 1 49173160 to 49173374 214 - pseudogene predicted gene 28740
Gm8367 1 49236223 to 49237008 785 + pseudogene predicted gene 8367
C230029F24Rik 1 49244616 to 49340431 95815 + lincRNA gene RIKEN cDNA C230029F24 gene
Gm6757 1 49399024 to 49400729 1705 - pseudogene predicted gene 6757
Tssr11561 1 49400787 to 49400799 12 - TSS region transcription start site region 11561
Gm3605 1 49498553 to 49498983 430 + pseudogene predicted gene 3605
D2Jpk1 1 49531286 to 49531433 147 DNA segment DNA segment, Chr 2, Japan, Kominami 1
Gm28388 1 49579150 to 49579586 436 - pseudogene predicted gene 28388
Gm8384 1 50056782 to 50058487 1705 + pseudogene predicted gene 8384
4933411E06Rik 1 50107470 to 50108962 1492 + lincRNA gene RIKEN cDNA 4933411E06 gene
Gm8391 1 50177569 to 50178291 722 - pseudogene predicted gene 8391
Gm27330 1 50222389 to 50222520 131 - unclassified non-coding RNA gene predicted gene, 27330
Gm39640 1 50297902 to 50322048 24146 - lncRNA gene predicted gene, 39640
Gm29665 1 50397552 to 50398079 527 - lincRNA gene predicted gene 29665
Gm20118 1 50533030 to 50533191 161 + pseudogene predicted gene, 20118
Gm25843 1 50559762 to 50560075 313 + unclassified non-coding RNA gene predicted gene, 25843
D1Mit528 1 50777691 to 50777776 85 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 528
Gm28321 1 50815375 to 50817701 2326 + lincRNA gene predicted gene 28321
Gm28322 1 50904444 to 50905918 1474 + lincRNA gene predicted gene 28322
Cpgi235 1 50926585 to 50928191 1606 CpG island CpG island 235
Tssr6619 1 50927497 to 50927506 9 + TSS region transcription start site region 6619
Tssr6620 1 50927511 to 50927543 32 + TSS region transcription start site region 6620
Tmeff2 1 50927523 to 51187270 259747 + protein coding gene transmembrane protein with EGF-like and two follistatin-like domains 2
Tssr79 1 50958688 to 50958691 3 + TSS region transcription start site region 79
Tssr11562 1 50981090 to 50981105 15 - TSS region transcription start site region 11562
Gm25736 1 51015313 to 51015413 100 + miRNA gene predicted gene, 25736
Tssr6621 1 51083515 to 51083518 3 + TSS region transcription start site region 6621
Gm28319 1 51138281 to 51141222 2941 - antisense lncRNA gene predicted gene 28319
Gm28320 1 51148309 to 51150581 2272 + sense intronic lncRNA gene predicted gene 28320
Gm29325 1 51195221 to 51197748 2527 + lincRNA gene predicted gene 29325
9330175M20Rik 1 51218386 to 51333779 115393 - antisense lncRNA gene RIKEN cDNA 9330175M20 gene
Tssr80 1 51250064 to 51250080 16 - TSS region transcription start site region 80
Tssr6622 1 51289106 to 51289142 36 + TSS region transcription start site region 6622
Cavin2 1 51289126 to 51302960 13834 + protein coding gene caveolae associated 2
Tssr6623 1 51289245 to 51289279 34 + TSS region transcription start site region 6623
Tssr6624 1 51289285 to 51289315 30 + TSS region transcription start site region 6624
Tssr6625 1 51289361 to 51289370 9 + TSS region transcription start site region 6625
Cpgi236 1 51289523 to 51289920 397 CpG island CpG island 236
Gm5253 1 51317531 to 51318552 1021 - pseudogene predicted gene 5253
D1Mit323 1 51386279 to 51386441 162 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 323
Cpgi237 1 51426594 to 51426789 195 CpG island CpG island 237
1700072G22Rik 1 51457932 to 51458931 999 - lincRNA gene RIKEN cDNA 1700072G22 gene
Nabp1 1 51465862 to 51478425 12563 - protein coding gene nucleic acid binding protein 1
Tssr11563 1 51466107 to 51466115 8 - TSS region transcription start site region 11563
Tssr11564 1 51473425 to 51473467 42 - TSS region transcription start site region 11564
Tssr11565 1 51473943 to 51473978 35 - TSS region transcription start site region 11565
Tssr11566 1 51474017 to 51474046 29 - TSS region transcription start site region 11566
Tssr11567 1 51475335 to 51475349 14 - TSS region transcription start site region 11567
Tssr6626 1 51476655 to 51476687 32 + TSS region transcription start site region 6626
Tssr11568 1 51477712 to 51477730 18 - TSS region transcription start site region 11568
Cpgi238 1 51477749 to 51478913 1164 CpG island CpG island 238
Tssr11569 1 51477911 to 51477923 12 - TSS region transcription start site region 11569
Tssr11570 1 51478123 to 51478131 8 - TSS region transcription start site region 11570
Tssr11571 1 51478390 to 51478406 16 - TSS region transcription start site region 11571
Tssr6627 1 51478514 to 51478522 8 + TSS region transcription start site region 6627
Tssr6628 1 51478624 to 51478652 28 + TSS region transcription start site region 6628
Tssr6629 1 51478661 to 51478680 19 + TSS region transcription start site region 6629
Tssr11572 1 51513031 to 51513033 2 - TSS region transcription start site region 11572
Tssr11573 1 51513172 to 51513183 11 - TSS region transcription start site region 11573
Gm37535 1 51527005 to 51529369 2364 - unclassified gene predicted gene, 37535
Tssr6630 1 51566530 to 51566551 21 + TSS region transcription start site region 6630
Tssr6631 1 51566573 to 51566599 26 + TSS region transcription start site region 6631
Tssr11574 1 51572795 to 51572807 12 - TSS region transcription start site region 11574
Gm17767 1 51582167 to 51607520 25353 - lincRNA gene predicted gene, 17767
Tssr11575 1 51584971 to 51584991 20 - TSS region transcription start site region 11575
Tssr11576 1 51585262 to 51585267 5 - TSS region transcription start site region 11576
Tssr6632 1 51585352 to 51585387 35 + TSS region transcription start site region 6632
Tssr6633 1 51585413 to 51585438 25 + TSS region transcription start site region 6633
Tssr6634 1 51593993 to 51593998 5 + TSS region transcription start site region 6634
Tssr6635 1 51594170 to 51594184 14 + TSS region transcription start site region 6635
Tssr6636 1 51594248 to 51594251 3 + TSS region transcription start site region 6636
Gm31636 1 51622474 to 51645946 23472 + lncRNA gene predicted gene, 31636
Tssr11577 1 51624401 to 51624410 9 - TSS region transcription start site region 11577
Gm28055 1 51696324 to 51746943 50619 - lincRNA gene predicted gene 28055
Tssr11578 1 51747054 to 51747070 16 - TSS region transcription start site region 11578
Tssr6637 1 51747098 to 51747127 29 + TSS region transcription start site region 6637
Myo1b 1 51749758 to 51915978 166220 - protein coding gene myosin IB
Tssr11579 1 51797029 to 51797071 42 - TSS region transcription start site region 11579
Gm29453 1 51847840 to 51849118 1278 - sense intronic lncRNA gene predicted gene 29453
Tssr11580 1 51852820 to 51852824 4 - TSS region transcription start site region 11580
Tssr11581 1 51858083 to 51858089 6 - TSS region transcription start site region 11581
Gm28323 1 51877110 to 51879608 2498 - sense intronic lncRNA gene predicted gene 28323
Tssr11582 1 51879421 to 51879446 25 - TSS region transcription start site region 11582
Tssr11583 1 51896022 to 51896031 9 - TSS region transcription start site region 11583
Tssr11584 1 51896035 to 51896045 10 - TSS region transcription start site region 11584
Tssr11585 1 51896067 to 51896083 16 - TSS region transcription start site region 11585
Cpgi239 1 51914983 to 51916523 1540 CpG island CpG island 239
Tssr11586 1 51915901 to 51915958 57 - TSS region transcription start site region 11586
Tssr11587 1 51915968 to 51915978 10 - TSS region transcription start site region 11587
Gm33795 1 51916287 to 51919988 3701 + lncRNA gene predicted gene, 33795
Shali1 1 51924866 to 70367430 18442564 QTL survival time to hyperoxic acute lung injury 1
D1Mit478 1 51924866 to 51924960 94 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 478