Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:45070415-46980437

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sagg 1 40262417 to 45874398 5611981 heritable phenotypic marker saggy
Gm5268 1 45178067 to 45179006 939 + pseudogene predicted gene 5268
Col3a1 1 45311538 to 45349706 38168 + protein coding gene collagen, type III, alpha 1
Tssr6577 1 45311624 to 45311638 14 + TSS region transcription start site region 6577
Gm47302 1 45311673 to 45311813 140 + miRNA gene predicted gene, 47302
Tssr11524 1 45312970 to 45312987 17 - TSS region transcription start site region 11524
Tssr6578 1 45321589 to 45321641 52 + TSS region transcription start site region 6578
Tssr6579 1 45330551 to 45330571 20 + TSS region transcription start site region 6579
Tssr11525 1 45332000 to 45332032 32 - TSS region transcription start site region 11525
Tssr6580 1 45332130 to 45332142 12 + TSS region transcription start site region 6580
Tssr6581 1 45332159 to 45332184 25 + TSS region transcription start site region 6581
Tssr11526 1 45332175 to 45332210 35 - TSS region transcription start site region 11526
Tssr6582 1 45332960 to 45332996 36 + TSS region transcription start site region 6582
Tssr6583 1 45333604 to 45333618 14 + TSS region transcription start site region 6583
Tssr11527 1 45334620 to 45334637 17 - TSS region transcription start site region 11527
Tssr11528 1 45334786 to 45334816 30 - TSS region transcription start site region 11528
Tssr11529 1 45335160 to 45335189 29 - TSS region transcription start site region 11529
Tssr6584 1 45337294 to 45337314 20 + TSS region transcription start site region 6584
Tssr6585 1 45337417 to 45337439 22 + TSS region transcription start site region 6585
Tssr6586 1 45338706 to 45338740 34 + TSS region transcription start site region 6586
Tssr11530 1 45339385 to 45339402 17 - TSS region transcription start site region 11530
Tssr11531 1 45339917 to 45339957 40 - TSS region transcription start site region 11531
Tssr11532 1 45343488 to 45343504 16 - TSS region transcription start site region 11532
Tssr11533 1 45345044 to 45345061 17 - TSS region transcription start site region 11533
Tssr6587 1 45345841 to 45345855 14 + TSS region transcription start site region 6587
Tssr6588 1 45345856 to 45345928 72 + TSS region transcription start site region 6588
Tssr6589 1 45345943 to 45345985 42 + TSS region transcription start site region 6589
Tssr6590 1 45346037 to 45346058 21 + TSS region transcription start site region 6590
Tssr6591 1 45347188 to 45347227 39 + TSS region transcription start site region 6591
Tssr6592 1 45347632 to 45347694 62 + TSS region transcription start site region 6592
Tssr6593 1 45347702 to 45347764 62 + TSS region transcription start site region 6593
Tssr6594 1 45347769 to 45347787 18 + TSS region transcription start site region 6594
Tssr6595 1 45348607 to 45348624 17 + TSS region transcription start site region 6595
Tssr6596 1 45348630 to 45348665 35 + TSS region transcription start site region 6596
Tssr6597 1 45348715 to 45348756 41 + TSS region transcription start site region 6597
Tssr6598 1 45348784 to 45348829 45 + TSS region transcription start site region 6598
Tssr6599 1 45348891 to 45348936 45 + TSS region transcription start site region 6599
Tssr6600 1 45348950 to 45348961 11 + TSS region transcription start site region 6600
Tssr6601 1 45348964 to 45348996 32 + TSS region transcription start site region 6601
Tssr72 1 45349599 to 45349602 3 + TSS region transcription start site region 72
Col5a2 1 45374331 to 45503282 128951 - protein coding gene collagen, type V, alpha 2
Eae30 1 45378613 to 72935898 27557285 QTL experimental allergic encephalomyelitis susceptibility 30
Habiir1 1 45378613 to 51924960 6546347 QTL hyperoxic acute lung injury imprinted region 1
D1Mit236 1 45378613 to 45378760 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 236
Tssr6602 1 45402094 to 45402106 12 + TSS region transcription start site region 6602
Tssr11534 1 45442717 to 45442752 35 - TSS region transcription start site region 11534
Gm38211 1 45485836 to 45493052 7216 - unclassified gene predicted gene, 38211
Tssr11535 1 45502565 to 45502568 3 - TSS region transcription start site region 11535
Tssr11536 1 45503056 to 45503071 15 - TSS region transcription start site region 11536
D1Dcr36 1 45509123 to 45509218 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 36
Gm8296 1 45513532 to 45514055 523 - pseudogene predicted gene 8296
Gm7063 1 45519774 to 45520754 980 - pseudogene predicted gene 7063
Gm8304 1 45602026 to 45602753 727 + pseudogene predicted gene 8304
Gm39637 1 45684793 to 45734129 49336 - lncRNA gene predicted gene, 39637
Gm23216 1 45685456 to 45685562 106 - snRNA gene predicted gene, 23216
D1Dcr37 1 45727441 to 45727536 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 37
D1Mit235 1 45744740 to 45744883 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 235
Gm23974 1 45746895 to 45747025 130 + snoRNA gene predicted gene, 23974
Gm8307 1 45768511 to 45769483 972 + pseudogene predicted gene 8307
Gm23984 1 45772962 to 45773164 202 + ribozyme gene predicted gene, 23984
Cpgi229 1 45795138 to 45795939 801 CpG island CpG island 229
Wdr75 1 45795166 to 45823619 28453 + protein coding gene WD repeat domain 75
Tssr6603 1 45795485 to 45795515 30 + TSS region transcription start site region 6603
Tssr6604 1 45795519 to 45795530 11 + TSS region transcription start site region 6604
Tssr6605 1 45796023 to 45796027 4 + TSS region transcription start site region 6605
Gm30900 1 45826151 to 45830144 3993 - lncRNA gene predicted gene, 30900
Gm28906 1 45833800 to 45836788 2988 - pseudogene predicted gene 28906
Gm5526 1 45857332 to 45857754 422 - pseudogene predicted pseudogene 5526
Tssr6606 1 45857736 to 45857757 21 + TSS region transcription start site region 6606
Tssr6607 1 45860606 to 45860613 7 + TSS region transcription start site region 6607
Tssr11537 1 45873376 to 45873423 47 - TSS region transcription start site region 11537
D1Mit234.1 1 45874202 to 45874333 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 234.1
D1Mit234 1 45874254 to 45874398 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 234
Tssr6608 1 45881725 to 45881736 11 + TSS region transcription start site region 6608
Gm5269 1 45889525 to 45890273 748 - pseudogene predicted gene 5269
Gm18303 1 45905623 to 45906798 1175 + pseudogene predicted gene, 18303
Slc40a1 1 45908068 to 45926523 18455 - protein coding gene solute carrier family 40 (iron-regulated transporter), member 1
Cpgi230 1 45925281 to 45926146 865 CpG island CpG island 230
Tssr11538 1 45925570 to 45925588 18 - TSS region transcription start site region 11538
Tssr73 1 45925599 to 45925604 5 - TSS region transcription start site region 73
Tssr11539 1 45926501 to 45926560 59 - TSS region transcription start site region 11539
Tssr11540 1 45927968 to 45927985 17 - TSS region transcription start site region 11540
Tssr11541 1 45927999 to 45928009 10 - TSS region transcription start site region 11541
Gm9496 1 45971182 to 45976975 5793 + pseudogene predicted gene 9496
Rpl23a-ps1 1 45981548 to 45982012 464 + pseudogene ribosomal protein 23A, pseudogene 1
Gm3852 1 46011757 to 46012020 263 - pseudogene predicted gene 3852
Stk-ps2 1 46020415 to 46030437 10022 - pseudogene serine/threonine kinase 2
Gm18849 1 46056310 to 46058986 2676 + pseudogene predicted gene, 18849
Dnah7b 1 46066315 to 46373546 307231 + protein coding gene dynein, axonemal, heavy chain 7B
Cpgi231 1 46066726 to 46067148 422 CpG island CpG island 231
Tssr6609 1 46066820 to 46066844 24 + TSS region transcription start site region 6609
Tssr6610 1 46066846 to 46066895 49 + TSS region transcription start site region 6610
Tssr11542 1 46076021 to 46076053 32 - TSS region transcription start site region 11542
Cpgi232 1 46088738 to 46089409 671 CpG island CpG island 232
Tssr6611 1 46088874 to 46088881 7 + TSS region transcription start site region 6611
Gm31046 1 46221792 to 46233437 11645 - lncRNA gene predicted gene, 31046
n-R5s211 1 46374197 to 46374315 118 + rRNA gene nuclear encoded rRNA 5S 211
Gm8326 1 46414502 to 46416932 2430 + pseudogene predicted gene 8326
Tssr11543 1 46425427 to 46425437 10 - TSS region transcription start site region 11543
Tssr6612 1 46425442 to 46425447 5 + TSS region transcription start site region 6612
Cpgi233 1 46425450 to 46425747 297 CpG island CpG island 233
Tssr6613 1 46425464 to 46425515 51 + TSS region transcription start site region 6613
Dnah7c 1 46425592 to 46807476 381884 + protein coding gene dynein, axonemal, heavy chain 7C
Tssr74 1 46427149 to 46427150 1 + TSS region transcription start site region 74
Tssr6614 1 46748117 to 46748120 3 + TSS region transcription start site region 6614
Slc39a10 1 46807544 to 46892852 85308 - protein coding gene solute carrier family 39 (zinc transporter), member 10
Gm28151 1 46849529 to 46850479 950 - lincRNA gene predicted gene 28151
Cpgi234 1 46852575 to 46854204 1629 CpG island CpG island 234
Tssr75 1 46852782 to 46852795 13 - TSS region transcription start site region 75
Tssr6615 1 46852916 to 46852931 15 + TSS region transcription start site region 6615
Tssr11544 1 46853423 to 46853442 19 - TSS region transcription start site region 11544
Tssr11545 1 46853482 to 46853571 89 - TSS region transcription start site region 11545
Tssr11546 1 46853583 to 46853605 22 - TSS region transcription start site region 11546
Tssr11547 1 46853609 to 46853630 21 - TSS region transcription start site region 11547
Tssr11548 1 46853849 to 46853862 13 - TSS region transcription start site region 11548
Tssr11549 1 46853883 to 46853916 33 - TSS region transcription start site region 11549
Tssr11550 1 46854052 to 46854079 27 - TSS region transcription start site region 11550
Gm37393 1 46877203 to 46881072 3869 - unclassified gene predicted gene, 37393
Tssr11551 1 46888085 to 46888100 15 - TSS region transcription start site region 11551
Tssr11552 1 46888133 to 46888140 7 - TSS region transcription start site region 11552
Tssr11553 1 46888141 to 46888153 12 - TSS region transcription start site region 11553
Tssr11554 1 46893022 to 46893031 9 - TSS region transcription start site region 11554
Tssr11555 1 46893049 to 46893066 17 - TSS region transcription start site region 11555
Tssr76 1 46893079 to 46893084 5 - TSS region transcription start site region 76
Tssr11556 1 46893132 to 46893136 4 - TSS region transcription start site region 11556
Tssr6616 1 46894631 to 46894658 27 + TSS region transcription start site region 6616
Gm28527 1 46896583 to 46896879 296 - pseudogene predicted gene 28527
Tssr11557 1 46925756 to 46925772 16 - TSS region transcription start site region 11557
Tssr11558 1 46925785 to 46925804 19 - TSS region transcription start site region 11558
Cia9 1 189571420 to 45744740 -143826680 QTL collagen induced arthritis QTL 9