Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:4445471-4776406

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox17 1 4490931 to 4497354 6423 - protein coding gene SRY (sex determining region Y)-box 17
Cpgi4 1 4491620 to 4493791 2171 CpG island CpG island 4
Tssr10877 1 4493598 to 4493614 16 - TSS region transcription start site region 10877
Tssr10878 1 4496372 to 4496389 17 - TSS region transcription start site region 10878
Tssr10879 1 4496400 to 4496420 20 - TSS region transcription start site region 10879
Tssr10880 1 4496424 to 4496446 22 - TSS region transcription start site region 10880
Tssr10881 1 4496449 to 4496476 27 - TSS region transcription start site region 10881
Tssr10882 1 4496513 to 4496531 18 - TSS region transcription start site region 10882
Gm37587 1 4496551 to 4499558 3007 + unclassified non-coding RNA gene predicted gene, 37587
Cpgi5 1 4496763 to 4497717 954 CpG island CpG island 5
Tssr10883 1 4497366 to 4497391 25 - TSS region transcription start site region 10883
Tssr10884 1 4497395 to 4497409 14 - TSS region transcription start site region 10884
Tssr5797 1 4522816 to 4522864 48 + TSS region transcription start site region 5797
Gm7357 1 4522905 to 4526737 3832 + pseudogene predicted gene 7357
Gm22307 1 4529017 to 4529123 106 + snRNA gene predicted gene, 22307
Gm38076 1 4534837 to 4535286 449 - pseudogene predicted gene, 38076
D1Mit427 1 4536568 to 4536681 113 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 427
Cpgi6 1 4571499 to 4572209 710 CpG island CpG island 6
Gm37323 1 4583129 to 4586252 3123 - lincRNA gene predicted gene, 37323
Gm39586 1 4595057 to 4602832 7775 + lncRNA gene predicted gene, 39586
Tssr10885 1 4602168 to 4602169 1 - TSS region transcription start site region 10885
Gm46082 1 4603255 to 4606521 3266 - lncRNA gene predicted gene, 46082
Gm29874 1 4608937 to 4617805 8868 + lncRNA gene predicted gene, 29874
Tssr10886 1 4608982 to 4609021 39 - TSS region transcription start site region 10886
Gm7369 1 4610471 to 4611406 935 + pseudogene predicted gene 7369
Cpgi7 1 4688129 to 4688477 348 CpG island CpG island 7
Gm6085 1 4688569 to 4689409 840 - pseudogene predicted gene 6085
Gm6119 1 4692219 to 4693424 1205 - pseudogene predicted gene 6119
Tssr5798 1 4722855 to 4722893 38 + TSS region transcription start site region 5798
Gm25493 1 4723277 to 4723379 102 - snRNA gene predicted gene, 25493
Gm2053 1 4735050 to 4735679 629 - pseudogene predicted gene 2053
Tssr5799 1 4771094 to 4771122 28 + TSS region transcription start site region 5799
Gm6123 1 4771131 to 4772199 1068 + pseudogene predicted gene 6123
Mrpl15 1 4773206 to 4785739 12533 - protein coding gene mitochondrial ribosomal protein L15