Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:44150702-45440747

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ercc5 1 44147744 to 44181260 33516 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 5
Tssr6566 1 44173332 to 44173378 46 + TSS region transcription start site region 6566
Tssr71 1 44174673 to 44174688 15 + TSS region transcription start site region 71
Cpgi227 1 44198646 to 44199188 542 CpG island CpG island 227
Mettl21e 1 44204070 to 44218931 14861 - protein coding gene methyltransferase like 21E
Tssr6567 1 44211721 to 44211731 10 + TSS region transcription start site region 6567
Gm15833 1 44212162 to 44213118 956 + pseudogene predicted gene 15833
Tssr11522 1 44218905 to 44218951 46 - TSS region transcription start site region 11522
Tssr11523 1 44218952 to 44218961 9 - TSS region transcription start site region 11523
Gm5700 1 44330051 to 44331038 987 - pseudogene predicted gene 5700
D1Dcr34 1 44342193 to 44342288 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 34
D1Dcr35 1 44364469 to 44364564 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 35
Gm28893 1 44392830 to 44393832 1002 + lncRNA gene predicted gene 28893
Txn-ps1 1 44463923 to 44464231 308 - pseudogene thioredoxin, pseudogene 1
Gm39635 1 44522564 to 44551457 28893 - lncRNA gene predicted gene, 39635
Tssr6568 1 44551483 to 44551499 16 + TSS region transcription start site region 6568
Gulp1 1 44551511 to 44796838 245327 + protein coding gene GULP, engulfment adaptor PTB domain containing 1
Cpgi228 1 44551560 to 44552531 971 CpG island CpG island 228
Tssr6569 1 44551560 to 44551566 6 + TSS region transcription start site region 6569
Tssr6570 1 44551650 to 44551704 54 + TSS region transcription start site region 6570
Tssr6571 1 44551711 to 44551714 3 + TSS region transcription start site region 6571
Tssr6572 1 44551719 to 44551726 7 + TSS region transcription start site region 6572
Tssr6573 1 44551748 to 44551758 10 + TSS region transcription start site region 6573
Gm37626 1 44560885 to 44565447 4562 + unclassified gene predicted gene, 37626
Gm16102 1 44644279 to 44644698 419 + pseudogene predicted gene 16102
Tssr6574 1 44652452 to 44652456 4 + TSS region transcription start site region 6574
4930521E06Rik 1 44739676 to 44744949 5273 - antisense lncRNA gene RIKEN cDNA 4930521E06 gene
Gm38110 1 44756942 to 44758492 1550 + unclassified gene predicted gene, 38110
Tssr6575 1 44789397 to 44789400 3 + TSS region transcription start site region 6575
Tssr6576 1 44795702 to 44795747 45 + TSS region transcription start site region 6576
Gm3489 1 44839171 to 44839698 527 + pseudogene predicted gene 3489
Gm19480 1 44873486 to 44874152 666 - pseudogene predicted gene, 19480
Gm3496 1 44924149 to 44924893 744 - pseudogene predicted gene 3496
Gm5268 1 45178067 to 45179006 939 + pseudogene predicted gene 5268
Col3a1 1 45311538 to 45349706 38168 + protein coding gene collagen, type III, alpha 1
Tssr6577 1 45311624 to 45311638 14 + TSS region transcription start site region 6577
Gm47302 1 45311673 to 45311813 140 + miRNA gene predicted gene, 47302
Tssr11524 1 45312970 to 45312987 17 - TSS region transcription start site region 11524
Tssr6578 1 45321589 to 45321641 52 + TSS region transcription start site region 6578
Tssr6579 1 45330551 to 45330571 20 + TSS region transcription start site region 6579
Tssr11525 1 45332000 to 45332032 32 - TSS region transcription start site region 11525
Tssr6580 1 45332130 to 45332142 12 + TSS region transcription start site region 6580
Tssr6581 1 45332159 to 45332184 25 + TSS region transcription start site region 6581
Tssr11526 1 45332175 to 45332210 35 - TSS region transcription start site region 11526
Tssr6582 1 45332960 to 45332996 36 + TSS region transcription start site region 6582
Tssr6583 1 45333604 to 45333618 14 + TSS region transcription start site region 6583
Tssr11527 1 45334620 to 45334637 17 - TSS region transcription start site region 11527
Tssr11528 1 45334786 to 45334816 30 - TSS region transcription start site region 11528
Tssr11529 1 45335160 to 45335189 29 - TSS region transcription start site region 11529
Tssr6584 1 45337294 to 45337314 20 + TSS region transcription start site region 6584
Tssr6585 1 45337417 to 45337439 22 + TSS region transcription start site region 6585
Tssr6586 1 45338706 to 45338740 34 + TSS region transcription start site region 6586
Tssr11530 1 45339385 to 45339402 17 - TSS region transcription start site region 11530
Tssr11531 1 45339917 to 45339957 40 - TSS region transcription start site region 11531
Tssr11532 1 45343488 to 45343504 16 - TSS region transcription start site region 11532
Tssr11533 1 45345044 to 45345061 17 - TSS region transcription start site region 11533
Tssr6587 1 45345841 to 45345855 14 + TSS region transcription start site region 6587
Tssr6588 1 45345856 to 45345928 72 + TSS region transcription start site region 6588
Tssr6589 1 45345943 to 45345985 42 + TSS region transcription start site region 6589
Tssr6590 1 45346037 to 45346058 21 + TSS region transcription start site region 6590
Tssr6591 1 45347188 to 45347227 39 + TSS region transcription start site region 6591
Tssr6592 1 45347632 to 45347694 62 + TSS region transcription start site region 6592
Tssr6593 1 45347702 to 45347764 62 + TSS region transcription start site region 6593
Tssr6594 1 45347769 to 45347787 18 + TSS region transcription start site region 6594
Tssr6595 1 45348607 to 45348624 17 + TSS region transcription start site region 6595
Tssr6596 1 45348630 to 45348665 35 + TSS region transcription start site region 6596
Tssr6597 1 45348715 to 45348756 41 + TSS region transcription start site region 6597
Tssr6598 1 45348784 to 45348829 45 + TSS region transcription start site region 6598
Tssr6599 1 45348891 to 45348936 45 + TSS region transcription start site region 6599
Tssr6600 1 45348950 to 45348961 11 + TSS region transcription start site region 6600
Tssr6601 1 45348964 to 45348996 32 + TSS region transcription start site region 6601
Tssr72 1 45349599 to 45349602 3 + TSS region transcription start site region 72
Col5a2 1 45374331 to 45503282 128951 - protein coding gene collagen, type V, alpha 2
Eae30 1 45378613 to 72935898 27557285 QTL experimental allergic encephalomyelitis susceptibility 30
D1Mit236 1 45378613 to 45378760 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 236
Habiir1 1 45378613 to 51924960 6546347 QTL hyperoxic acute lung injury imprinted region 1
Tssr6602 1 45402094 to 45402106 12 + TSS region transcription start site region 6602