Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:44142744-50782776

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216 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sagg 1 40262417 to 45874398 5611981 heritable phenotypic marker saggy
Bivm 1 44118962 to 44144771 25809 + protein coding gene basic, immunoglobulin-like variable motif containing
Cpgi226 1 44147446 to 44148297 851 CpG island CpG island 226
Ercc5 1 44147744 to 44181260 33516 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 5
Shm1 1 44147744 to 50777776 6630032 QTL sperm head morphology 1
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Tssr6564 1 44147873 to 44147934 61 + TSS region transcription start site region 6564
Tssr6565 1 44147937 to 44147952 15 + TSS region transcription start site region 6565
Tssr6566 1 44173332 to 44173378 46 + TSS region transcription start site region 6566
Tssr71 1 44174673 to 44174688 15 + TSS region transcription start site region 71
Cpgi227 1 44198646 to 44199188 542 CpG island CpG island 227
Mettl21e 1 44204070 to 44218931 14861 - protein coding gene methyltransferase like 21E
Tssr6567 1 44211721 to 44211731 10 + TSS region transcription start site region 6567
Gm15833 1 44212162 to 44213118 956 + pseudogene predicted gene 15833
Tssr11522 1 44218905 to 44218951 46 - TSS region transcription start site region 11522
Tssr11523 1 44218952 to 44218961 9 - TSS region transcription start site region 11523
Gm5700 1 44330051 to 44331038 987 - pseudogene predicted gene 5700
D1Dcr34 1 44342193 to 44342288 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 34
D1Dcr35 1 44364469 to 44364564 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 35
Gm28893 1 44392830 to 44393832 1002 + lncRNA gene predicted gene 28893
Txn-ps1 1 44463923 to 44464231 308 - pseudogene thioredoxin, pseudogene 1
Gm39635 1 44522564 to 44551457 28893 - lncRNA gene predicted gene, 39635
Tssr6568 1 44551483 to 44551499 16 + TSS region transcription start site region 6568
Gulp1 1 44551511 to 44796838 245327 + protein coding gene GULP, engulfment adaptor PTB domain containing 1
Tssr6569 1 44551560 to 44551566 6 + TSS region transcription start site region 6569
Cpgi228 1 44551560 to 44552531 971 CpG island CpG island 228
Tssr6570 1 44551650 to 44551704 54 + TSS region transcription start site region 6570
Tssr6571 1 44551711 to 44551714 3 + TSS region transcription start site region 6571
Tssr6572 1 44551719 to 44551726 7 + TSS region transcription start site region 6572
Tssr6573 1 44551748 to 44551758 10 + TSS region transcription start site region 6573
Gm37626 1 44560885 to 44565447 4562 + unclassified gene predicted gene, 37626
Gm16102 1 44644279 to 44644698 419 + pseudogene predicted gene 16102
Tssr6574 1 44652452 to 44652456 4 + TSS region transcription start site region 6574
4930521E06Rik 1 44739676 to 44744949 5273 - antisense lncRNA gene RIKEN cDNA 4930521E06 gene
Gm38110 1 44756942 to 44758492 1550 + unclassified gene predicted gene, 38110
Tssr6575 1 44789397 to 44789400 3 + TSS region transcription start site region 6575
Tssr6576 1 44795702 to 44795747 45 + TSS region transcription start site region 6576
Gm3489 1 44839171 to 44839698 527 + pseudogene predicted gene 3489
Gm19480 1 44873486 to 44874152 666 - pseudogene predicted gene, 19480
Gm3496 1 44924149 to 44924893 744 - pseudogene predicted gene 3496
Gm5268 1 45178067 to 45179006 939 + pseudogene predicted gene 5268
Col3a1 1 45311538 to 45349706 38168 + protein coding gene collagen, type III, alpha 1
Tssr6577 1 45311624 to 45311638 14 + TSS region transcription start site region 6577
Gm47302 1 45311673 to 45311813 140 + miRNA gene predicted gene, 47302
Tssr11524 1 45312970 to 45312987 17 - TSS region transcription start site region 11524
Tssr6578 1 45321589 to 45321641 52 + TSS region transcription start site region 6578
Tssr6579 1 45330551 to 45330571 20 + TSS region transcription start site region 6579
Tssr11525 1 45332000 to 45332032 32 - TSS region transcription start site region 11525
Tssr6580 1 45332130 to 45332142 12 + TSS region transcription start site region 6580
Tssr6581 1 45332159 to 45332184 25 + TSS region transcription start site region 6581
Tssr11526 1 45332175 to 45332210 35 - TSS region transcription start site region 11526
Tssr6582 1 45332960 to 45332996 36 + TSS region transcription start site region 6582
Tssr6583 1 45333604 to 45333618 14 + TSS region transcription start site region 6583
Tssr11527 1 45334620 to 45334637 17 - TSS region transcription start site region 11527
Tssr11528 1 45334786 to 45334816 30 - TSS region transcription start site region 11528
Tssr11529 1 45335160 to 45335189 29 - TSS region transcription start site region 11529
Tssr6584 1 45337294 to 45337314 20 + TSS region transcription start site region 6584
Tssr6585 1 45337417 to 45337439 22 + TSS region transcription start site region 6585
Tssr6586 1 45338706 to 45338740 34 + TSS region transcription start site region 6586
Tssr11530 1 45339385 to 45339402 17 - TSS region transcription start site region 11530
Tssr11531 1 45339917 to 45339957 40 - TSS region transcription start site region 11531
Tssr11532 1 45343488 to 45343504 16 - TSS region transcription start site region 11532
Tssr11533 1 45345044 to 45345061 17 - TSS region transcription start site region 11533
Tssr6587 1 45345841 to 45345855 14 + TSS region transcription start site region 6587
Tssr6588 1 45345856 to 45345928 72 + TSS region transcription start site region 6588
Tssr6589 1 45345943 to 45345985 42 + TSS region transcription start site region 6589
Tssr6590 1 45346037 to 45346058 21 + TSS region transcription start site region 6590
Tssr6591 1 45347188 to 45347227 39 + TSS region transcription start site region 6591
Tssr6592 1 45347632 to 45347694 62 + TSS region transcription start site region 6592
Tssr6593 1 45347702 to 45347764 62 + TSS region transcription start site region 6593
Tssr6594 1 45347769 to 45347787 18 + TSS region transcription start site region 6594
Tssr6595 1 45348607 to 45348624 17 + TSS region transcription start site region 6595
Tssr6596 1 45348630 to 45348665 35 + TSS region transcription start site region 6596
Tssr6597 1 45348715 to 45348756 41 + TSS region transcription start site region 6597
Tssr6598 1 45348784 to 45348829 45 + TSS region transcription start site region 6598
Tssr6599 1 45348891 to 45348936 45 + TSS region transcription start site region 6599
Tssr6600 1 45348950 to 45348961 11 + TSS region transcription start site region 6600
Tssr6601 1 45348964 to 45348996 32 + TSS region transcription start site region 6601
Tssr72 1 45349599 to 45349602 3 + TSS region transcription start site region 72
Col5a2 1 45374331 to 45503282 128951 - protein coding gene collagen, type V, alpha 2
D1Mit236 1 45378613 to 45378760 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 236
Habiir1 1 45378613 to 51924960 6546347 QTL hyperoxic acute lung injury imprinted region 1
Eae30 1 45378613 to 72935898 27557285 QTL experimental allergic encephalomyelitis susceptibility 30
Tssr6602 1 45402094 to 45402106 12 + TSS region transcription start site region 6602
Tssr11534 1 45442717 to 45442752 35 - TSS region transcription start site region 11534
Gm38211 1 45485836 to 45493052 7216 - unclassified gene predicted gene, 38211
Tssr11535 1 45502565 to 45502568 3 - TSS region transcription start site region 11535
Tssr11536 1 45503056 to 45503071 15 - TSS region transcription start site region 11536
D1Dcr36 1 45509123 to 45509218 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 36
Gm8296 1 45513532 to 45514055 523 - pseudogene predicted gene 8296
Gm7063 1 45519774 to 45520754 980 - pseudogene predicted gene 7063
Gm8304 1 45602026 to 45602753 727 + pseudogene predicted gene 8304
Gm39637 1 45684793 to 45734129 49336 - lncRNA gene predicted gene, 39637
Gm23216 1 45685456 to 45685562 106 - snRNA gene predicted gene, 23216
D1Dcr37 1 45727441 to 45727536 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 37
D1Mit235 1 45744740 to 45744883 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 235
Gm23974 1 45746895 to 45747025 130 + snoRNA gene predicted gene, 23974
Gm8307 1 45768511 to 45769483 972 + pseudogene predicted gene 8307
Gm23984 1 45772962 to 45773164 202 + ribozyme gene predicted gene, 23984
Cpgi229 1 45795138 to 45795939 801 CpG island CpG island 229
Wdr75 1 45795166 to 45823619 28453 + protein coding gene WD repeat domain 75
Tssr6603 1 45795485 to 45795515 30 + TSS region transcription start site region 6603
Tssr6604 1 45795519 to 45795530 11 + TSS region transcription start site region 6604
Tssr6605 1 45796023 to 45796027 4 + TSS region transcription start site region 6605
Gm30900 1 45826151 to 45830144 3993 - lncRNA gene predicted gene, 30900
Gm28906 1 45833800 to 45836788 2988 - pseudogene predicted gene 28906
Gm5526 1 45857332 to 45857754 422 - pseudogene predicted pseudogene 5526
Tssr6606 1 45857736 to 45857757 21 + TSS region transcription start site region 6606
Tssr6607 1 45860606 to 45860613 7 + TSS region transcription start site region 6607
Tssr11537 1 45873376 to 45873423 47 - TSS region transcription start site region 11537
D1Mit234.1 1 45874202 to 45874333 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 234.1
D1Mit234 1 45874254 to 45874398 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 234
Tssr6608 1 45881725 to 45881736 11 + TSS region transcription start site region 6608
Gm5269 1 45889525 to 45890273 748 - pseudogene predicted gene 5269
Gm18303 1 45905623 to 45906798 1175 + pseudogene predicted gene, 18303
Slc40a1 1 45908068 to 45926523 18455 - protein coding gene solute carrier family 40 (iron-regulated transporter), member 1
Cpgi230 1 45925281 to 45926146 865 CpG island CpG island 230
Tssr11538 1 45925570 to 45925588 18 - TSS region transcription start site region 11538
Tssr73 1 45925599 to 45925604 5 - TSS region transcription start site region 73
Tssr11539 1 45926501 to 45926560 59 - TSS region transcription start site region 11539
Tssr11540 1 45927968 to 45927985 17 - TSS region transcription start site region 11540
Tssr11541 1 45927999 to 45928009 10 - TSS region transcription start site region 11541
Gm9496 1 45971182 to 45976975 5793 + pseudogene predicted gene 9496
Rpl23a-ps1 1 45981548 to 45982012 464 + pseudogene ribosomal protein 23A, pseudogene 1
Gm3852 1 46011757 to 46012020 263 - pseudogene predicted gene 3852
Stk-ps2 1 46020415 to 46030437 10022 - pseudogene serine/threonine kinase 2
Gm18849 1 46056310 to 46058986 2676 + pseudogene predicted gene, 18849
Dnah7b 1 46066315 to 46373546 307231 + protein coding gene dynein, axonemal, heavy chain 7B
Cpgi231 1 46066726 to 46067148 422 CpG island CpG island 231
Tssr6609 1 46066820 to 46066844 24 + TSS region transcription start site region 6609
Tssr6610 1 46066846 to 46066895 49 + TSS region transcription start site region 6610
Tssr11542 1 46076021 to 46076053 32 - TSS region transcription start site region 11542
Cpgi232 1 46088738 to 46089409 671 CpG island CpG island 232
Tssr6611 1 46088874 to 46088881 7 + TSS region transcription start site region 6611
Gm31046 1 46221792 to 46233437 11645 - lncRNA gene predicted gene, 31046
n-R5s211 1 46374197 to 46374315 118 + rRNA gene nuclear encoded rRNA 5S 211
Gm8326 1 46414502 to 46416932 2430 + pseudogene predicted gene 8326
Tssr11543 1 46425427 to 46425437 10 - TSS region transcription start site region 11543
Tssr6612 1 46425442 to 46425447 5 + TSS region transcription start site region 6612
Cpgi233 1 46425450 to 46425747 297 CpG island CpG island 233
Tssr6613 1 46425464 to 46425515 51 + TSS region transcription start site region 6613
Dnah7c 1 46425592 to 46807476 381884 + protein coding gene dynein, axonemal, heavy chain 7C
Tssr74 1 46427149 to 46427150 1 + TSS region transcription start site region 74
Tssr6614 1 46748117 to 46748120 3 + TSS region transcription start site region 6614
Slc39a10 1 46807544 to 46892852 85308 - protein coding gene solute carrier family 39 (zinc transporter), member 10
Gm28151 1 46849529 to 46850479 950 - lincRNA gene predicted gene 28151
Cpgi234 1 46852575 to 46854204 1629 CpG island CpG island 234
Tssr75 1 46852782 to 46852795 13 - TSS region transcription start site region 75
Tssr6615 1 46852916 to 46852931 15 + TSS region transcription start site region 6615
Tssr11544 1 46853423 to 46853442 19 - TSS region transcription start site region 11544
Tssr11545 1 46853482 to 46853571 89 - TSS region transcription start site region 11545
Tssr11546 1 46853583 to 46853605 22 - TSS region transcription start site region 11546
Tssr11547 1 46853609 to 46853630 21 - TSS region transcription start site region 11547
Tssr11548 1 46853849 to 46853862 13 - TSS region transcription start site region 11548
Tssr11549 1 46853883 to 46853916 33 - TSS region transcription start site region 11549
Tssr11550 1 46854052 to 46854079 27 - TSS region transcription start site region 11550
Gm37393 1 46877203 to 46881072 3869 - unclassified gene predicted gene, 37393
Tssr11551 1 46888085 to 46888100 15 - TSS region transcription start site region 11551
Tssr11552 1 46888133 to 46888140 7 - TSS region transcription start site region 11552
Tssr11553 1 46888141 to 46888153 12 - TSS region transcription start site region 11553
Tssr11554 1 46893022 to 46893031 9 - TSS region transcription start site region 11554
Tssr11555 1 46893049 to 46893066 17 - TSS region transcription start site region 11555
Tssr76 1 46893079 to 46893084 5 - TSS region transcription start site region 76
Tssr11556 1 46893132 to 46893136 4 - TSS region transcription start site region 11556
Tssr6616 1 46894631 to 46894658 27 + TSS region transcription start site region 6616
Gm28527 1 46896583 to 46896879 296 - pseudogene predicted gene 28527
Tssr11557 1 46925756 to 46925772 16 - TSS region transcription start site region 11557
Tssr11558 1 46925785 to 46925804 19 - TSS region transcription start site region 11558
Gm28825 1 47067788 to 47068025 237 + pseudogene predicted gene 28825
Tssr6617 1 47091158 to 47091164 6 + TSS region transcription start site region 6617
Gm28826 1 47153461 to 47189071 35610 + lincRNA gene predicted gene 28826
AU014756 1 47190578 to 47191218 640 unclassified gene expressed sequence AU014756
Gm39638 1 47251863 to 47288100 36237 + lncRNA gene predicted gene, 39638
Gm4852 1 47365644 to 47366372 728 - pseudogene predicted pseudogene 4852
Gm39639 1 47433524 to 47461160 27636 + lncRNA gene predicted gene, 39639
Gm38090 1 47433824 to 47435765 1941 - unclassified gene predicted gene, 38090
Mir6350 1 47467021 to 47467125 104 - miRNA gene microRNA 6350
Gm18117 1 47479511 to 47480198 687 + pseudogene predicted gene, 18117
Gm37196 1 47605996 to 47606901 905 + unclassified gene predicted gene, 37196
Gm8337 1 47657693 to 47659630 1937 + pseudogene predicted gene 8337
Tssr77 1 47659352 to 47659356 4 + TSS region transcription start site region 77
Gm22419 1 47749279 to 47749399 120 - miRNA gene predicted gene, 22419
Gm23829 1 47751299 to 47751568 269 - unclassified non-coding RNA gene predicted gene, 23829
Gm19206 1 47915005 to 47915815 810 - pseudogene predicted gene, 19206
Tssr6618 1 47917438 to 47917443 5 + TSS region transcription start site region 6618
Gm5974 1 48313866 to 48314851 985 - pseudogene predicted gene 5974
Gm23240 1 48462173 to 48462293 120 - snRNA gene predicted gene, 23240
Tssr11559 1 48462292 to 48462293 1 - TSS region transcription start site region 11559
Gm28830 1 48527639 to 48527851 212 + pseudogene predicted gene 28830
Tssr78 1 48582684 to 48582689 5 + TSS region transcription start site region 78
D1Mit175 1 48583041 to 48583174 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 175
Tssr11560 1 48698693 to 48698699 6 - TSS region transcription start site region 11560
Gm8354 1 48731579 to 48733090 1511 - pseudogene predicted gene 8354
Gm19124 1 48783663 to 48784593 930 + pseudogene predicted gene, 19124
Gm8357 1 48881713 to 48882723 1010 + pseudogene predicted gene 8357
Gm19644 1 49003981 to 49004831 850 - pseudogene predicted gene, 19644
Gm22693 1 49095444 to 49095885 441 + miRNA gene predicted gene, 22693
D1Mit434 1 49106509 to 49106649 140 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 434
Gm28740 1 49173160 to 49173374 214 - pseudogene predicted gene 28740
Gm8367 1 49236223 to 49237008 785 + pseudogene predicted gene 8367