Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:44139469-44589564

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bivm 1 44118962 to 44144771 25809 + protein coding gene basic, immunoglobulin-like variable motif containing
Cpgi226 1 44147446 to 44148297 851 CpG island CpG island 226
Shm1 1 44147744 to 50777776 6630032 QTL sperm head morphology 1
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Ercc5 1 44147744 to 44181260 33516 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 5
Tssr6564 1 44147873 to 44147934 61 + TSS region transcription start site region 6564
Tssr6565 1 44147937 to 44147952 15 + TSS region transcription start site region 6565
Tssr6566 1 44173332 to 44173378 46 + TSS region transcription start site region 6566
Tssr71 1 44174673 to 44174688 15 + TSS region transcription start site region 71
Cpgi227 1 44198646 to 44199188 542 CpG island CpG island 227
Mettl21e 1 44204070 to 44218931 14861 - protein coding gene methyltransferase like 21E
Tssr6567 1 44211721 to 44211731 10 + TSS region transcription start site region 6567
Gm15833 1 44212162 to 44213118 956 + pseudogene predicted gene 15833
Tssr11522 1 44218905 to 44218951 46 - TSS region transcription start site region 11522
Tssr11523 1 44218952 to 44218961 9 - TSS region transcription start site region 11523
Gm5700 1 44330051 to 44331038 987 - pseudogene predicted gene 5700
D1Dcr34 1 44342193 to 44342288 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 34
D1Dcr35 1 44364469 to 44364564 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 35
Gm28893 1 44392830 to 44393832 1002 + lncRNA gene predicted gene 28893
Txn-ps1 1 44463923 to 44464231 308 - pseudogene thioredoxin, pseudogene 1
Gm39635 1 44522564 to 44551457 28893 - lncRNA gene predicted gene, 39635
Tssr6568 1 44551483 to 44551499 16 + TSS region transcription start site region 6568
Gulp1 1 44551511 to 44796838 245327 + protein coding gene GULP, engulfment adaptor PTB domain containing 1
Cpgi228 1 44551560 to 44552531 971 CpG island CpG island 228
Tssr6569 1 44551560 to 44551566 6 + TSS region transcription start site region 6569
Tssr6570 1 44551650 to 44551704 54 + TSS region transcription start site region 6570
Tssr6571 1 44551711 to 44551714 3 + TSS region transcription start site region 6571
Tssr6572 1 44551719 to 44551726 7 + TSS region transcription start site region 6572
Tssr6573 1 44551748 to 44551758 10 + TSS region transcription start site region 6573
Gm37626 1 44560885 to 44565447 4562 + unclassified gene predicted gene, 37626