Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:43846711-45256714

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr6549 1 43887986 to 43888008 22 + TSS region transcription start site region 6549
Gm19587 1 43888051 to 43888595 544 + pseudogene predicted gene, 19587
Cpgi221 1 43898063 to 43898323 260 CpG island CpG island 221
Gm8241 1 43898294 to 43899109 815 + pseudogene predicted gene 8241
Gm26352 1 43902928 to 43903052 124 + snoRNA gene predicted gene, 26352
Gm24180 1 43918777 to 43918886 109 - miRNA gene predicted gene, 24180
Cpgi222 1 43933515 to 43934653 1138 CpG island CpG island 222
Tssr6550 1 43933608 to 43933626 18 + TSS region transcription start site region 6550
Tssr6551 1 43933680 to 43933694 14 + TSS region transcription start site region 6551
Tssr11507 1 43933837 to 43933914 77 - TSS region transcription start site region 11507
Tpp2 1 43933865 to 44003000 69135 + protein coding gene tripeptidyl peptidase II
Tssr6552 1 43933980 to 43934076 96 + TSS region transcription start site region 6552
Tssr6553 1 43934757 to 43934761 4 + TSS region transcription start site region 6553
Tssr6554 1 43958819 to 43958825 6 + TSS region transcription start site region 6554
Tssr6555 1 43969859 to 43969865 6 + TSS region transcription start site region 6555
Tssr6556 1 43983179 to 43983193 14 + TSS region transcription start site region 6556
Tssr6557 1 43983520 to 43983544 24 + TSS region transcription start site region 6557
Tssr6558 1 43985042 to 43985046 4 + TSS region transcription start site region 6558
D1Dcr33 1 44007822 to 44007919 97 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 33
Mettl21c 1 44009408 to 44020034 10626 - protein coding gene methyltransferase like 21C
Gm15838 1 44018470 to 44018649 179 - pseudogene predicted gene 15838
Tssr11508 1 44019929 to 44019940 11 - TSS region transcription start site region 11508
Gm8251 1 44055952 to 44061936 5984 - protein coding gene predicted gene 8251
Tssr11509 1 44079662 to 44079668 6 - TSS region transcription start site region 11509
Tssr11510 1 44079742 to 44079749 7 - TSS region transcription start site region 11510
Tex30 1 44086613 to 44102441 15828 - protein coding gene testis expressed 30
Gm29247 1 44091463 to 44110790 19327 - unclassified non-coding RNA gene predicted gene 29247
Tssr6559 1 44101636 to 44101641 5 + TSS region transcription start site region 6559
Tssr11511 1 44101637 to 44101649 12 - TSS region transcription start site region 11511
Cpgi223 1 44101644 to 44102766 1122 CpG island CpG island 223
Tssr11512 1 44101653 to 44101659 6 - TSS region transcription start site region 11512
Tssr11513 1 44101661 to 44101673 12 - TSS region transcription start site region 11513
Tssr11514 1 44101982 to 44101996 14 - TSS region transcription start site region 11514
Tssr11515 1 44102341 to 44102344 3 - TSS region transcription start site region 11515
Tssr11516 1 44102377 to 44102398 21 - TSS region transcription start site region 11516
Tssr11517 1 44102417 to 44102428 11 - TSS region transcription start site region 11517
Tssr11518 1 44102433 to 44102448 15 - TSS region transcription start site region 11518
Tssr11519 1 44102470 to 44102475 5 - TSS region transcription start site region 11519
Poglut2 1 44106546 to 44118808 12262 - protein coding gene protein O-glucosyltransferase 2
Cpgi224 1 44118376 to 44118939 563 CpG island CpG island 224
Tssr11520 1 44118711 to 44118722 11 - TSS region transcription start site region 11520
Tssr11521 1 44118757 to 44118816 59 - TSS region transcription start site region 11521
Tssr6560 1 44118951 to 44119009 58 + TSS region transcription start site region 6560
Bivm 1 44118962 to 44144771 25809 + protein coding gene basic, immunoglobulin-like variable motif containing
Cpgi225 1 44119194 to 44120113 919 CpG island CpG island 225
Tssr6561 1 44119451 to 44119519 68 + TSS region transcription start site region 6561
Tssr6562 1 44119952 to 44119985 33 + TSS region transcription start site region 6562
Tssr6563 1 44120088 to 44120102 14 + TSS region transcription start site region 6563
Cpgi226 1 44147446 to 44148297 851 CpG island CpG island 226
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Shm1 1 44147744 to 50777776 6630032 QTL sperm head morphology 1
Ercc5 1 44147744 to 44181260 33516 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 5
Tssr6564 1 44147873 to 44147934 61 + TSS region transcription start site region 6564
Tssr6565 1 44147937 to 44147952 15 + TSS region transcription start site region 6565
Tssr6566 1 44173332 to 44173378 46 + TSS region transcription start site region 6566
Tssr71 1 44174673 to 44174688 15 + TSS region transcription start site region 71
Cpgi227 1 44198646 to 44199188 542 CpG island CpG island 227
Mettl21e 1 44204070 to 44218931 14861 - protein coding gene methyltransferase like 21E
Tssr6567 1 44211721 to 44211731 10 + TSS region transcription start site region 6567
Gm15833 1 44212162 to 44213118 956 + pseudogene predicted gene 15833
Tssr11522 1 44218905 to 44218951 46 - TSS region transcription start site region 11522
Tssr11523 1 44218952 to 44218961 9 - TSS region transcription start site region 11523
Gm5700 1 44330051 to 44331038 987 - pseudogene predicted gene 5700
D1Dcr34 1 44342193 to 44342288 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 34
D1Dcr35 1 44364469 to 44364564 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 35
Gm28893 1 44392830 to 44393832 1002 + lncRNA gene predicted gene 28893
Txn-ps1 1 44463923 to 44464231 308 - pseudogene thioredoxin, pseudogene 1
Gm39635 1 44522564 to 44551457 28893 - lncRNA gene predicted gene, 39635
Tssr6568 1 44551483 to 44551499 16 + TSS region transcription start site region 6568
Gulp1 1 44551511 to 44796838 245327 + protein coding gene GULP, engulfment adaptor PTB domain containing 1
Cpgi228 1 44551560 to 44552531 971 CpG island CpG island 228
Tssr6569 1 44551560 to 44551566 6 + TSS region transcription start site region 6569
Tssr6570 1 44551650 to 44551704 54 + TSS region transcription start site region 6570
Tssr6571 1 44551711 to 44551714 3 + TSS region transcription start site region 6571
Tssr6572 1 44551719 to 44551726 7 + TSS region transcription start site region 6572
Tssr6573 1 44551748 to 44551758 10 + TSS region transcription start site region 6573
Gm37626 1 44560885 to 44565447 4562 + unclassified gene predicted gene, 37626
Gm16102 1 44644279 to 44644698 419 + pseudogene predicted gene 16102
Tssr6574 1 44652452 to 44652456 4 + TSS region transcription start site region 6574
4930521E06Rik 1 44739676 to 44744949 5273 - antisense lncRNA gene RIKEN cDNA 4930521E06 gene
Gm38110 1 44756942 to 44758492 1550 + unclassified gene predicted gene, 38110
Tssr6575 1 44789397 to 44789400 3 + TSS region transcription start site region 6575
Tssr6576 1 44795702 to 44795747 45 + TSS region transcription start site region 6576
Gm3489 1 44839171 to 44839698 527 + pseudogene predicted gene 3489
Gm19480 1 44873486 to 44874152 666 - pseudogene predicted gene, 19480
Gm3496 1 44924149 to 44924893 744 - pseudogene predicted gene 3496
Gm5268 1 45178067 to 45179006 939 + pseudogene predicted gene 5268