Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Sagg | 1 | 5611981 | heritable phenotypic marker | saggy | ||
Gm38628 | 1 | 15554 | + | lncRNA gene | predicted gene, 38628 | |
Gm30634 | 1 | 3955 | + | lncRNA gene | predicted gene, 30634 | |
Tssr6544 | 1 | 40 | + | TSS region | transcription start site region 6544 | |
1500015O10Rik | 1 | 11962 | + | protein coding gene | RIKEN cDNA 1500015O10 gene | |
Tssr6545 | 1 | 14 | + | TSS region | transcription start site region 6545 | |
Tssr6546 | 1 | 52 | + | TSS region | transcription start site region 6546 | |
Cpgi219 | 1 | 235 | CpG island | CpG island 219 | ||
Tssr6547 | 1 | 11 | + | TSS region | transcription start site region 6547 | |
Tssr6548 | 1 | 64 | + | TSS region | transcription start site region 6548 | |
Gm29155 | 1 | 1934 | - | antisense lncRNA gene | predicted gene 29155 | |
Tssr70 | 1 | 3 | - | TSS region | transcription start site region 70 | |
Gm29157 | 1 | 611 | + | lincRNA gene | predicted gene 29157 | |
Gm29156 | 1 | 498 | - | lincRNA gene | predicted gene 29156 | |
Uxs1 | 1 | 79969 | - | protein coding gene | UDP-glucuronate decarboxylase 1 | |
Gm16103 | 1 | 1278 | + | pseudogene | predicted gene 16103 | |
Tssr11503 | 1 | 2 | - | TSS region | transcription start site region 11503 | |
Tssr11504 | 1 | 31 | - | TSS region | transcription start site region 11504 | |
Cpgi220 | 1 | 1269 | CpG island | CpG island 220 | ||
Tssr11505 | 1 | 19 | - | TSS region | transcription start site region 11505 | |
Tssr11506 | 1 | 35 | - | TSS region | transcription start site region 11506 | |
Tssr6549 | 1 | 22 | + | TSS region | transcription start site region 6549 | |
Gm19587 | 1 | 544 | + | pseudogene | predicted gene, 19587 | |
Cpgi221 | 1 | 260 | CpG island | CpG island 221 | ||
Gm8241 | 1 | 815 | + | pseudogene | predicted gene 8241 | |
Gm26352 | 1 | 124 | + | snoRNA gene | predicted gene, 26352 | |
Gm24180 | 1 | 109 | - | miRNA gene | predicted gene, 24180 | |
Cpgi222 | 1 | 1138 | CpG island | CpG island 222 | ||
Tssr6550 | 1 | 18 | + | TSS region | transcription start site region 6550 | |
Tssr6551 | 1 | 14 | + | TSS region | transcription start site region 6551 | |
Tssr11507 | 1 | 77 | - | TSS region | transcription start site region 11507 | |
Tpp2 | 1 | 69135 | + | protein coding gene | tripeptidyl peptidase II | |
Tssr6552 | 1 | 96 | + | TSS region | transcription start site region 6552 | |
Tssr6553 | 1 | 4 | + | TSS region | transcription start site region 6553 | |
Tssr6554 | 1 | 6 | + | TSS region | transcription start site region 6554 | |
Tssr6555 | 1 | 6 | + | TSS region | transcription start site region 6555 | |
Tssr6556 | 1 | 14 | + | TSS region | transcription start site region 6556 | |
Tssr6557 | 1 | 24 | + | TSS region | transcription start site region 6557 | |
Tssr6558 | 1 | 4 | + | TSS region | transcription start site region 6558 | |
D1Dcr33 | 1 | 97 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 33 | ||
Mettl21c | 1 | 10626 | - | protein coding gene | methyltransferase like 21C | |
Gm15838 | 1 | 179 | - | pseudogene | predicted gene 15838 | |
Tssr11508 | 1 | 11 | - | TSS region | transcription start site region 11508 | |
Gm8251 | 1 | 5984 | - | protein coding gene | predicted gene 8251 | |
Tssr11509 | 1 | 6 | - | TSS region | transcription start site region 11509 | |
Tssr11510 | 1 | 7 | - | TSS region | transcription start site region 11510 | |
Tex30 | 1 | 15828 | - | protein coding gene | testis expressed 30 | |
Gm29247 | 1 | 19327 | - | unclassified non-coding RNA gene | predicted gene 29247 | |
Tssr6559 | 1 | 5 | + | TSS region | transcription start site region 6559 | |
Tssr11511 | 1 | 12 | - | TSS region | transcription start site region 11511 | |
Cpgi223 | 1 | 1122 | CpG island | CpG island 223 | ||
Tssr11512 | 1 | 6 | - | TSS region | transcription start site region 11512 | |
Tssr11513 | 1 | 12 | - | TSS region | transcription start site region 11513 | |
Tssr11514 | 1 | 14 | - | TSS region | transcription start site region 11514 | |
Tssr11515 | 1 | 3 | - | TSS region | transcription start site region 11515 | |
Tssr11516 | 1 | 21 | - | TSS region | transcription start site region 11516 | |
Tssr11517 | 1 | 11 | - | TSS region | transcription start site region 11517 | |
Tssr11518 | 1 | 15 | - | TSS region | transcription start site region 11518 | |
Tssr11519 | 1 | 5 | - | TSS region | transcription start site region 11519 | |
Poglut2 | 1 | 12262 | - | protein coding gene | protein O-glucosyltransferase 2 | |
Cpgi224 | 1 | 563 | CpG island | CpG island 224 | ||
Tssr11520 | 1 | 11 | - | TSS region | transcription start site region 11520 | |
Tssr11521 | 1 | 59 | - | TSS region | transcription start site region 11521 | |
Tssr6560 | 1 | 58 | + | TSS region | transcription start site region 6560 | |
Bivm | 1 | 25809 | + | protein coding gene | basic, immunoglobulin-like variable motif containing | |
Cpgi225 | 1 | 919 | CpG island | CpG island 225 | ||
Tssr6561 | 1 | 68 | + | TSS region | transcription start site region 6561 | |
Tssr6562 | 1 | 33 | + | TSS region | transcription start site region 6562 | |
Tssr6563 | 1 | 14 | + | TSS region | transcription start site region 6563 | |
Cpgi226 | 1 | 851 | CpG island | CpG island 226 | ||
Shm3 | 1 | 18759979 | QTL | sperm head morphology 3 | ||
Ercc5 | 1 | 33516 | + | protein coding gene | excision repair cross-complementing rodent repair deficiency, complementation group 5 | |
Shm1 | 1 | 6630032 | QTL | sperm head morphology 1 | ||
Tssr6564 | 1 | 61 | + | TSS region | transcription start site region 6564 | |
Tssr6565 | 1 | 15 | + | TSS region | transcription start site region 6565 | |
Tssr6566 | 1 | 46 | + | TSS region | transcription start site region 6566 | |
Tssr71 | 1 | 15 | + | TSS region | transcription start site region 71 | |
Cpgi227 | 1 | 542 | CpG island | CpG island 227 | ||
Mettl21e | 1 | 14861 | - | protein coding gene | methyltransferase like 21E | |
Tssr6567 | 1 | 10 | + | TSS region | transcription start site region 6567 | |
Gm15833 | 1 | 956 | + | pseudogene | predicted gene 15833 | |
Tssr11522 | 1 | 46 | - | TSS region | transcription start site region 11522 | |
Tssr11523 | 1 | 9 | - | TSS region | transcription start site region 11523 | |
Gm5700 | 1 | 987 | - | pseudogene | predicted gene 5700 | |
D1Dcr34 | 1 | 95 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 34 | ||
D1Dcr35 | 1 | 95 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 35 | ||
Gm28893 | 1 | 1002 | + | lncRNA gene | predicted gene 28893 | |
Txn-ps1 | 1 | 308 | - | pseudogene | thioredoxin, pseudogene 1 | |
Gm39635 | 1 | 28893 | - | lncRNA gene | predicted gene, 39635 | |
Tssr6568 | 1 | 16 | + | TSS region | transcription start site region 6568 | |
Gulp1 | 1 | 245327 | + | protein coding gene | GULP, engulfment adaptor PTB domain containing 1 | |
Tssr6569 | 1 | 6 | + | TSS region | transcription start site region 6569 | |
Cpgi228 | 1 | 971 | CpG island | CpG island 228 | ||
Tssr6570 | 1 | 54 | + | TSS region | transcription start site region 6570 | |
Tssr6571 | 1 | 3 | + | TSS region | transcription start site region 6571 | |
Tssr6572 | 1 | 7 | + | TSS region | transcription start site region 6572 | |
Tssr6573 | 1 | 10 | + | TSS region | transcription start site region 6573 | |
Gm37626 | 1 | 4562 | + | unclassified gene | predicted gene, 37626 | |
Gm16102 | 1 | 419 | + | pseudogene | predicted gene 16102 | |
Tssr6574 | 1 | 4 | + | TSS region | transcription start site region 6574 | |
4930521E06Rik | 1 | 5273 | - | antisense lncRNA gene | RIKEN cDNA 4930521E06 gene | |
Gm38110 | 1 | 1550 | + | unclassified gene | predicted gene, 38110 | |
Tssr6575 | 1 | 3 | + | TSS region | transcription start site region 6575 | |
Tssr6576 | 1 | 45 | + | TSS region | transcription start site region 6576 | |
Gm3489 | 1 | 527 | + | pseudogene | predicted gene 3489 | |
Gm19480 | 1 | 666 | - | pseudogene | predicted gene, 19480 | |
Gm3496 | 1 | 744 | - | pseudogene | predicted gene 3496 | |
Gm5268 | 1 | 939 | + | pseudogene | predicted gene 5268 | |
Col3a1 | 1 | 38168 | + | protein coding gene | collagen, type III, alpha 1 | |
Tssr6577 | 1 | 14 | + | TSS region | transcription start site region 6577 | |
Gm47302 | 1 | 140 | + | miRNA gene | predicted gene, 47302 | |
Tssr11524 | 1 | 17 | - | TSS region | transcription start site region 11524 | |
Tssr6578 | 1 | 52 | + | TSS region | transcription start site region 6578 | |
Tssr6579 | 1 | 20 | + | TSS region | transcription start site region 6579 | |
Tssr11525 | 1 | 32 | - | TSS region | transcription start site region 11525 | |
Tssr6580 | 1 | 12 | + | TSS region | transcription start site region 6580 | |
Tssr6581 | 1 | 25 | + | TSS region | transcription start site region 6581 | |
Tssr11526 | 1 | 35 | - | TSS region | transcription start site region 11526 | |
Tssr6582 | 1 | 36 | + | TSS region | transcription start site region 6582 | |
Tssr6583 | 1 | 14 | + | TSS region | transcription start site region 6583 | |
Tssr11527 | 1 | 17 | - | TSS region | transcription start site region 11527 | |
Tssr11528 | 1 | 30 | - | TSS region | transcription start site region 11528 | |
Tssr11529 | 1 | 29 | - | TSS region | transcription start site region 11529 | |
Tssr6584 | 1 | 20 | + | TSS region | transcription start site region 6584 | |
Tssr6585 | 1 | 22 | + | TSS region | transcription start site region 6585 | |
Tssr6586 | 1 | 34 | + | TSS region | transcription start site region 6586 | |
Tssr11530 | 1 | 17 | - | TSS region | transcription start site region 11530 | |
Tssr11531 | 1 | 40 | - | TSS region | transcription start site region 11531 | |
Tssr11532 | 1 | 16 | - | TSS region | transcription start site region 11532 | |
Tssr11533 | 1 | 17 | - | TSS region | transcription start site region 11533 | |
Tssr6587 | 1 | 14 | + | TSS region | transcription start site region 6587 | |
Tssr6588 | 1 | 72 | + | TSS region | transcription start site region 6588 | |
Tssr6589 | 1 | 42 | + | TSS region | transcription start site region 6589 | |
Tssr6590 | 1 | 21 | + | TSS region | transcription start site region 6590 | |
Tssr6591 | 1 | 39 | + | TSS region | transcription start site region 6591 | |
Tssr6592 | 1 | 62 | + | TSS region | transcription start site region 6592 | |
Tssr6593 | 1 | 62 | + | TSS region | transcription start site region 6593 | |
Tssr6594 | 1 | 18 | + | TSS region | transcription start site region 6594 | |
Tssr6595 | 1 | 17 | + | TSS region | transcription start site region 6595 | |
Tssr6596 | 1 | 35 | + | TSS region | transcription start site region 6596 | |
Tssr6597 | 1 | 41 | + | TSS region | transcription start site region 6597 | |
Tssr6598 | 1 | 45 | + | TSS region | transcription start site region 6598 | |
Tssr6599 | 1 | 45 | + | TSS region | transcription start site region 6599 | |
Tssr6600 | 1 | 11 | + | TSS region | transcription start site region 6600 | |
Tssr6601 | 1 | 32 | + | TSS region | transcription start site region 6601 | |
Tssr72 | 1 | 3 | + | TSS region | transcription start site region 72 | |
Col5a2 | 1 | 128951 | - | protein coding gene | collagen, type V, alpha 2 | |
Habiir1 | 1 | 6546347 | QTL | hyperoxic acute lung injury imprinted region 1 | ||
D1Mit236 | 1 | 147 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 236 | ||
Eae30 | 1 | 27557285 | QTL | experimental allergic encephalomyelitis susceptibility 30 | ||
Tssr6602 | 1 | 12 | + | TSS region | transcription start site region 6602 | |
Tssr11534 | 1 | 35 | - | TSS region | transcription start site region 11534 | |
Gm38211 | 1 | 7216 | - | unclassified gene | predicted gene, 38211 | |
Tssr11535 | 1 | 3 | - | TSS region | transcription start site region 11535 | |
Tssr11536 | 1 | 15 | - | TSS region | transcription start site region 11536 | |
D1Dcr36 | 1 | 95 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 36 | ||
Gm8296 | 1 | 523 | - | pseudogene | predicted gene 8296 | |
Gm7063 | 1 | 980 | - | pseudogene | predicted gene 7063 | |
Gm8304 | 1 | 727 | + | pseudogene | predicted gene 8304 | |
Gm39637 | 1 | 49336 | - | lncRNA gene | predicted gene, 39637 | |
Gm23216 | 1 | 106 | - | snRNA gene | predicted gene, 23216 | |
D1Dcr37 | 1 | 95 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 37 | ||
D1Mit235 | 1 | 143 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 235 | ||
Gm23974 | 1 | 130 | + | snoRNA gene | predicted gene, 23974 | |
Gm8307 | 1 | 972 | + | pseudogene | predicted gene 8307 | |
Gm23984 | 1 | 202 | + | ribozyme gene | predicted gene, 23984 | |
Cpgi229 | 1 | 801 | CpG island | CpG island 229 | ||
Wdr75 | 1 | 28453 | + | protein coding gene | WD repeat domain 75 | |
Tssr6603 | 1 | 30 | + | TSS region | transcription start site region 6603 | |
Tssr6604 | 1 | 11 | + | TSS region | transcription start site region 6604 | |
Tssr6605 | 1 | 4 | + | TSS region | transcription start site region 6605 | |
Gm30900 | 1 | 3993 | - | lncRNA gene | predicted gene, 30900 | |
Gm28906 | 1 | 2988 | - | pseudogene | predicted gene 28906 | |
Gm5526 | 1 | 422 | - | pseudogene | predicted pseudogene 5526 | |
Tssr6606 | 1 | 21 | + | TSS region | transcription start site region 6606 | |
Tssr6607 | 1 | 7 | + | TSS region | transcription start site region 6607 | |
Tssr11537 | 1 | 47 | - | TSS region | transcription start site region 11537 | |
D1Mit234.1 | 1 | 131 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 234.1 | ||
D1Mit234 | 1 | 144 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 234 | ||
Tssr6608 | 1 | 11 | + | TSS region | transcription start site region 6608 | |
Gm5269 | 1 | 748 | - | pseudogene | predicted gene 5269 | |
Gm18303 | 1 | 1175 | + | pseudogene | predicted gene, 18303 | |
Slc40a1 | 1 | 18455 | - | protein coding gene | solute carrier family 40 (iron-regulated transporter), member 1 | |
Cpgi230 | 1 | 865 | CpG island | CpG island 230 | ||
Tssr11538 | 1 | 18 | - | TSS region | transcription start site region 11538 | |
Tssr73 | 1 | 5 | - | TSS region | transcription start site region 73 | |
Tssr11539 | 1 | 59 | - | TSS region | transcription start site region 11539 | |
Tssr11540 | 1 | 17 | - | TSS region | transcription start site region 11540 | |
Tssr11541 | 1 | 10 | - | TSS region | transcription start site region 11541 | |
Gm9496 | 1 | 5793 | + | pseudogene | predicted gene 9496 | |
Rpl23a-ps1 | 1 | 464 | + | pseudogene | ribosomal protein 23A, pseudogene 1 | |
Gm3852 | 1 | 263 | - | pseudogene | predicted gene 3852 | |
Stk-ps2 | 1 | 10022 | - | pseudogene | serine/threonine kinase 2 | |
Gm18849 | 1 | 2676 | + | pseudogene | predicted gene, 18849 | |
Dnah7b | 1 | 307231 | + | protein coding gene | dynein, axonemal, heavy chain 7B | |
Cpgi231 | 1 | 422 | CpG island | CpG island 231 | ||
Tssr6609 | 1 | 24 | + | TSS region | transcription start site region 6609 | |
Tssr6610 | 1 | 49 | + | TSS region | transcription start site region 6610 | |
Tssr11542 | 1 | 32 | - | TSS region | transcription start site region 11542 | |
Cpgi232 | 1 | 671 | CpG island | CpG island 232 |