Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:43498980-44369076

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nck2 1 43445751 to 43570518 124767 + protein coding gene non-catalytic region of tyrosine kinase adaptor protein 2
Tssr11499 1 43502846 to 43502850 4 - TSS region transcription start site region 11499
Tssr6536 1 43503237 to 43503243 6 + TSS region transcription start site region 6536
Tssr11500 1 43521845 to 43521850 5 - TSS region transcription start site region 11500
Tssr11501 1 43522027 to 43522068 41 - TSS region transcription start site region 11501
Tssr6537 1 43522301 to 43522309 8 + TSS region transcription start site region 6537
Tssr6538 1 43532225 to 43532235 10 + TSS region transcription start site region 6538
Tssr6539 1 43532372 to 43532387 15 + TSS region transcription start site region 6539
Tssr6540 1 43537283 to 43537297 14 + TSS region transcription start site region 6540
Tssr11502 1 43542425 to 43542435 10 - TSS region transcription start site region 11502
Tssr6541 1 43542508 to 43542549 41 + TSS region transcription start site region 6541
Tssr6542 1 43544884 to 43544908 24 + TSS region transcription start site region 6542
Cpgi218 1 43553985 to 43554253 268 CpG island CpG island 218
Gm38228 1 43560273 to 43561565 1292 + unclassified gene predicted gene, 38228
Tssr6543 1 43561371 to 43561379 8 + TSS region transcription start site region 6543
Gm38628 1 43680426 to 43695980 15554 + lncRNA gene predicted gene, 38628
Gm30634 1 43714283 to 43718238 3955 + lncRNA gene predicted gene, 30634
Tssr6544 1 43730593 to 43730633 40 + TSS region transcription start site region 6544
1500015O10Rik 1 43730602 to 43742564 11962 + protein coding gene RIKEN cDNA 1500015O10 gene
Tssr6545 1 43730640 to 43730654 14 + TSS region transcription start site region 6545
Tssr6546 1 43730666 to 43730718 52 + TSS region transcription start site region 6546
Cpgi219 1 43730674 to 43730909 235 CpG island CpG island 219
Tssr6547 1 43730788 to 43730799 11 + TSS region transcription start site region 6547
Tssr6548 1 43730811 to 43730875 64 + TSS region transcription start site region 6548
Gm29155 1 43741961 to 43743895 1934 - antisense lncRNA gene predicted gene 29155
Tssr70 1 43742561 to 43742564 3 - TSS region transcription start site region 70
Gm29157 1 43742915 to 43743526 611 + lincRNA gene predicted gene 29157
Gm29156 1 43745784 to 43746282 498 - lincRNA gene predicted gene 29156
Uxs1 1 43747850 to 43827819 79969 - protein coding gene UDP-glucuronate decarboxylase 1
Gm16103 1 43785910 to 43787188 1278 + pseudogene predicted gene 16103
Tssr11503 1 43811902 to 43811904 2 - TSS region transcription start site region 11503
Tssr11504 1 43826552 to 43826583 31 - TSS region transcription start site region 11504
Cpgi220 1 43826983 to 43828252 1269 CpG island CpG island 220
Tssr11505 1 43827723 to 43827742 19 - TSS region transcription start site region 11505
Tssr11506 1 43827751 to 43827786 35 - TSS region transcription start site region 11506
Tssr6549 1 43887986 to 43888008 22 + TSS region transcription start site region 6549
Gm19587 1 43888051 to 43888595 544 + pseudogene predicted gene, 19587
Cpgi221 1 43898063 to 43898323 260 CpG island CpG island 221
Gm8241 1 43898294 to 43899109 815 + pseudogene predicted gene 8241
Gm26352 1 43902928 to 43903052 124 + snoRNA gene predicted gene, 26352
Gm24180 1 43918777 to 43918886 109 - miRNA gene predicted gene, 24180
Cpgi222 1 43933515 to 43934653 1138 CpG island CpG island 222
Tssr6550 1 43933608 to 43933626 18 + TSS region transcription start site region 6550
Tssr6551 1 43933680 to 43933694 14 + TSS region transcription start site region 6551
Tssr11507 1 43933837 to 43933914 77 - TSS region transcription start site region 11507
Tpp2 1 43933865 to 44003000 69135 + protein coding gene tripeptidyl peptidase II
Tssr6552 1 43933980 to 43934076 96 + TSS region transcription start site region 6552
Tssr6553 1 43934757 to 43934761 4 + TSS region transcription start site region 6553
Tssr6554 1 43958819 to 43958825 6 + TSS region transcription start site region 6554
Tssr6555 1 43969859 to 43969865 6 + TSS region transcription start site region 6555
Tssr6556 1 43983179 to 43983193 14 + TSS region transcription start site region 6556
Tssr6557 1 43983520 to 43983544 24 + TSS region transcription start site region 6557
Tssr6558 1 43985042 to 43985046 4 + TSS region transcription start site region 6558
D1Dcr33 1 44007822 to 44007919 97 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 33
Mettl21c 1 44009408 to 44020034 10626 - protein coding gene methyltransferase like 21C
Gm15838 1 44018470 to 44018649 179 - pseudogene predicted gene 15838
Tssr11508 1 44019929 to 44019940 11 - TSS region transcription start site region 11508
Gm8251 1 44055952 to 44061936 5984 - protein coding gene predicted gene 8251
Tssr11509 1 44079662 to 44079668 6 - TSS region transcription start site region 11509
Tssr11510 1 44079742 to 44079749 7 - TSS region transcription start site region 11510
Tex30 1 44086613 to 44102441 15828 - protein coding gene testis expressed 30
Gm29247 1 44091463 to 44110790 19327 - unclassified non-coding RNA gene predicted gene 29247
Tssr6559 1 44101636 to 44101641 5 + TSS region transcription start site region 6559
Tssr11511 1 44101637 to 44101649 12 - TSS region transcription start site region 11511
Cpgi223 1 44101644 to 44102766 1122 CpG island CpG island 223
Tssr11512 1 44101653 to 44101659 6 - TSS region transcription start site region 11512
Tssr11513 1 44101661 to 44101673 12 - TSS region transcription start site region 11513
Tssr11514 1 44101982 to 44101996 14 - TSS region transcription start site region 11514
Tssr11515 1 44102341 to 44102344 3 - TSS region transcription start site region 11515
Tssr11516 1 44102377 to 44102398 21 - TSS region transcription start site region 11516
Tssr11517 1 44102417 to 44102428 11 - TSS region transcription start site region 11517
Tssr11518 1 44102433 to 44102448 15 - TSS region transcription start site region 11518
Tssr11519 1 44102470 to 44102475 5 - TSS region transcription start site region 11519
Poglut2 1 44106546 to 44118808 12262 - protein coding gene protein O-glucosyltransferase 2
Cpgi224 1 44118376 to 44118939 563 CpG island CpG island 224
Tssr11520 1 44118711 to 44118722 11 - TSS region transcription start site region 11520
Tssr11521 1 44118757 to 44118816 59 - TSS region transcription start site region 11521
Tssr6560 1 44118951 to 44119009 58 + TSS region transcription start site region 6560
Bivm 1 44118962 to 44144771 25809 + protein coding gene basic, immunoglobulin-like variable motif containing
Cpgi225 1 44119194 to 44120113 919 CpG island CpG island 225
Tssr6561 1 44119451 to 44119519 68 + TSS region transcription start site region 6561
Tssr6562 1 44119952 to 44119985 33 + TSS region transcription start site region 6562
Tssr6563 1 44120088 to 44120102 14 + TSS region transcription start site region 6563
Cpgi226 1 44147446 to 44148297 851 CpG island CpG island 226
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Shm1 1 44147744 to 50777776 6630032 QTL sperm head morphology 1
Ercc5 1 44147744 to 44181260 33516 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 5
Tssr6564 1 44147873 to 44147934 61 + TSS region transcription start site region 6564
Tssr6565 1 44147937 to 44147952 15 + TSS region transcription start site region 6565
Tssr6566 1 44173332 to 44173378 46 + TSS region transcription start site region 6566
Tssr71 1 44174673 to 44174688 15 + TSS region transcription start site region 71
Cpgi227 1 44198646 to 44199188 542 CpG island CpG island 227
Mettl21e 1 44204070 to 44218931 14861 - protein coding gene methyltransferase like 21E
Tssr6567 1 44211721 to 44211731 10 + TSS region transcription start site region 6567
Gm15833 1 44212162 to 44213118 956 + pseudogene predicted gene 15833
Tssr11522 1 44218905 to 44218951 46 - TSS region transcription start site region 11522
Tssr11523 1 44218952 to 44218961 9 - TSS region transcription start site region 11523
Gm5700 1 44330051 to 44331038 987 - pseudogene predicted gene 5700
D1Dcr34 1 44342193 to 44342288 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 34
D1Dcr35 1 44364469 to 44364564 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 35