Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:42747302-44167315

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dalir 1 42750712 to 42752881 2169 + lincRNA gene DNMT1 associated long intergenic non-coding RNA
Gm46091 1 42762307 to 42774147 11840 + lncRNA gene predicted gene, 46091
Cpgi209 1 42780500 to 42780667 167 CpG island CpG island 209
Cpgi210 1 42850970 to 42851892 922 CpG island CpG island 210
Mrps9 1 42851233 to 42905683 54450 + protein coding gene mitochondrial ribosomal protein S9
Tssr6517 1 42851253 to 42851295 42 + TSS region transcription start site region 6517
Gm23126 1 42866685 to 42866818 133 - snoRNA gene predicted gene, 23126
Gm39633 1 42936623 to 42952667 16044 - lncRNA gene predicted gene, 39633
Cpgi211 1 42952739 to 42953784 1045 CpG island CpG island 211
Gpr45 1 42952872 to 43035451 82579 + protein coding gene G protein-coupled receptor 45
Tssr6518 1 42952949 to 42952983 34 + TSS region transcription start site region 6518
Tssr6519 1 42952984 to 42953028 44 + TSS region transcription start site region 6519
Tssr6520 1 42953106 to 42953164 58 + TSS region transcription start site region 6520
Tssr6521 1 42954135 to 42954141 6 + TSS region transcription start site region 6521
Gm3418 1 42998978 to 42999477 499 - pseudogene predicted gene 3418
V125Dq1 1 43000000 to 43000000 0 QTL vitamin D active form serum level QTL 1
Cpgi212 1 43032270 to 43033111 841 CpG island CpG island 212
Gm24001 1 43036845 to 43036929 84 + miRNA gene predicted gene, 24001
Tgfbrap1 1 43047265 to 43098637 51372 - protein coding gene transforming growth factor, beta receptor associated protein 1
Gm28782 1 43056267 to 43057134 867 + antisense lncRNA gene predicted gene 28782
Cpgi213 1 43091656 to 43092998 1342 CpG island CpG island 213
Tssr11467 1 43092438 to 43092498 60 - TSS region transcription start site region 11467
8430432A02Rik 1 43092588 to 43093835 1247 + antisense lncRNA gene RIKEN cDNA 8430432A02 gene
Cpgi214 1 43098348 to 43099059 711 CpG island CpG island 214
Tssr11468 1 43098625 to 43098686 61 - TSS region transcription start site region 11468
Tssr68 1 43098692 to 43098711 19 + TSS region transcription start site region 68
AI597479 1 43098710 to 43115946 17236 + protein coding gene expressed sequence AI597479
Tssr6522 1 43098712 to 43098760 48 + TSS region transcription start site region 6522
D1Mit477 1 43119939 to 43120045 106 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 477
Fhl2 1 43123074 to 43196984 73910 - protein coding gene four and a half LIM domains 2
Cpgi215 1 43123472 to 43123981 509 CpG island CpG island 215
Tssr11469 1 43141855 to 43141872 17 - TSS region transcription start site region 11469
Tssr11470 1 43145561 to 43145569 8 - TSS region transcription start site region 11470
Tssr11471 1 43159186 to 43159192 6 - TSS region transcription start site region 11471
Tssr11472 1 43160080 to 43160089 9 - TSS region transcription start site region 11472
Tssr11473 1 43162001 to 43162012 11 - TSS region transcription start site region 11473
Cpgi216 1 43163480 to 43164405 925 CpG island CpG island 216
Tssr11474 1 43163821 to 43163832 11 - TSS region transcription start site region 11474
Tssr11475 1 43163847 to 43163861 14 - TSS region transcription start site region 11475
Tssr11476 1 43163874 to 43163890 16 - TSS region transcription start site region 11476
Tssr11477 1 43163891 to 43163962 71 - TSS region transcription start site region 11477
Tssr11478 1 43164077 to 43164099 22 - TSS region transcription start site region 11478
Tssr11479 1 43170565 to 43170570 5 - TSS region transcription start site region 11479
Tssr11480 1 43183631 to 43183658 27 - TSS region transcription start site region 11480
Tssr11481 1 43183767 to 43183794 27 - TSS region transcription start site region 11481
Tssr11482 1 43183810 to 43183835 25 - TSS region transcription start site region 11482
Tssr11483 1 43183920 to 43183933 13 - TSS region transcription start site region 11483
Tssr11484 1 43186081 to 43186089 8 - TSS region transcription start site region 11484
Tssr11485 1 43186150 to 43186159 9 - TSS region transcription start site region 11485
Tssr11486 1 43186174 to 43186188 14 - TSS region transcription start site region 11486
Tssr11487 1 43186278 to 43186298 20 - TSS region transcription start site region 11487
Tssr11488 1 43186300 to 43186311 11 - TSS region transcription start site region 11488
Tssr11489 1 43186467 to 43186470 3 - TSS region transcription start site region 11489
Tssr11490 1 43186784 to 43186792 8 - TSS region transcription start site region 11490
Tssr11491 1 43187087 to 43187097 10 - TSS region transcription start site region 11491
Tssr11492 1 43187275 to 43187296 21 - TSS region transcription start site region 11492
Tssr11493 1 43187334 to 43187340 6 - TSS region transcription start site region 11493
Tssr6523 1 43189100 to 43189115 15 + TSS region transcription start site region 6523
Gm8210 1 43189156 to 43189638 482 + pseudogene predicted pseudogene 8210
Tssr11494 1 43196754 to 43196768 14 - TSS region transcription start site region 11494
Tssr6524 1 43196994 to 43197010 16 + TSS region transcription start site region 6524
Tssr6525 1 43197121 to 43197128 7 + TSS region transcription start site region 6525
Tssr11495 1 43198335 to 43198342 7 - TSS region transcription start site region 11495
Tssr6526 1 43204852 to 43204854 2 + TSS region transcription start site region 6526
Gm29040 1 43250156 to 43302925 52769 - lincRNA gene predicted gene 29040
Gm29610 1 43270683 to 43271135 452 + pseudogene predicted gene 29610
Tssr11496 1 43310898 to 43310909 11 - TSS region transcription start site region 11496
Tssr69 1 43310919 to 43310920 1 - TSS region transcription start site region 69
D1Mit213 1 43331416 to 43331523 107 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 213
Tssr11497 1 43397317 to 43397325 8 - TSS region transcription start site region 11497
Gm29041 1 43409584 to 43409963 379 + pseudogene predicted gene 29041
Tssr6527 1 43410946 to 43410949 3 + TSS region transcription start site region 6527
D1Mit375 1 43444015 to 43444137 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 375
Cpgi217 1 43445210 to 43446811 1601 CpG island CpG island 217
Tssr6528 1 43445714 to 43445722 8 + TSS region transcription start site region 6528
Tssr6529 1 43445736 to 43445830 94 + TSS region transcription start site region 6529
Nck2 1 43445751 to 43570518 124767 + protein coding gene non-catalytic region of tyrosine kinase adaptor protein 2
Tssr11498 1 43447153 to 43447164 11 - TSS region transcription start site region 11498
Tssr6530 1 43447215 to 43447219 4 + TSS region transcription start site region 6530
Tssr6531 1 43447346 to 43447355 9 + TSS region transcription start site region 6531
Tssr6532 1 43451064 to 43451098 34 + TSS region transcription start site region 6532
Tssr6533 1 43457248 to 43457282 34 + TSS region transcription start site region 6533
Tssr6534 1 43457302 to 43457315 13 + TSS region transcription start site region 6534
Gm37536 1 43488447 to 43490937 2490 + unclassified gene predicted gene, 37536
Tssr6535 1 43494769 to 43494771 2 + TSS region transcription start site region 6535
D1Mit248 1 43495356 to 43495496 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 248
Tssr11499 1 43502846 to 43502850 4 - TSS region transcription start site region 11499
Tssr6536 1 43503237 to 43503243 6 + TSS region transcription start site region 6536
Tssr11500 1 43521845 to 43521850 5 - TSS region transcription start site region 11500
Tssr11501 1 43522027 to 43522068 41 - TSS region transcription start site region 11501
Tssr6537 1 43522301 to 43522309 8 + TSS region transcription start site region 6537
Tssr6538 1 43532225 to 43532235 10 + TSS region transcription start site region 6538
Tssr6539 1 43532372 to 43532387 15 + TSS region transcription start site region 6539
Tssr6540 1 43537283 to 43537297 14 + TSS region transcription start site region 6540
Tssr11502 1 43542425 to 43542435 10 - TSS region transcription start site region 11502
Tssr6541 1 43542508 to 43542549 41 + TSS region transcription start site region 6541
Tssr6542 1 43544884 to 43544908 24 + TSS region transcription start site region 6542
Cpgi218 1 43553985 to 43554253 268 CpG island CpG island 218
Gm38228 1 43560273 to 43561565 1292 + unclassified gene predicted gene, 38228
Tssr6543 1 43561371 to 43561379 8 + TSS region transcription start site region 6543
Gm38628 1 43680426 to 43695980 15554 + lncRNA gene predicted gene, 38628
Gm30634 1 43714283 to 43718238 3955 + lncRNA gene predicted gene, 30634
Tssr6544 1 43730593 to 43730633 40 + TSS region transcription start site region 6544
1500015O10Rik 1 43730602 to 43742564 11962 + protein coding gene RIKEN cDNA 1500015O10 gene
Tssr6545 1 43730640 to 43730654 14 + TSS region transcription start site region 6545
Tssr6546 1 43730666 to 43730718 52 + TSS region transcription start site region 6546
Cpgi219 1 43730674 to 43730909 235 CpG island CpG island 219
Tssr6547 1 43730788 to 43730799 11 + TSS region transcription start site region 6547
Tssr6548 1 43730811 to 43730875 64 + TSS region transcription start site region 6548
Gm29155 1 43741961 to 43743895 1934 - antisense lncRNA gene predicted gene 29155
Tssr70 1 43742561 to 43742564 3 - TSS region transcription start site region 70
Gm29157 1 43742915 to 43743526 611 + lincRNA gene predicted gene 29157
Gm29156 1 43745784 to 43746282 498 - lincRNA gene predicted gene 29156
Uxs1 1 43747850 to 43827819 79969 - protein coding gene UDP-glucuronate decarboxylase 1
Gm16103 1 43785910 to 43787188 1278 + pseudogene predicted gene 16103
Tssr11503 1 43811902 to 43811904 2 - TSS region transcription start site region 11503
Tssr11504 1 43826552 to 43826583 31 - TSS region transcription start site region 11504
Cpgi220 1 43826983 to 43828252 1269 CpG island CpG island 220
Tssr11505 1 43827723 to 43827742 19 - TSS region transcription start site region 11505
Tssr11506 1 43827751 to 43827786 35 - TSS region transcription start site region 11506
Tssr6549 1 43887986 to 43888008 22 + TSS region transcription start site region 6549
Gm19587 1 43888051 to 43888595 544 + pseudogene predicted gene, 19587
Cpgi221 1 43898063 to 43898323 260 CpG island CpG island 221
Gm8241 1 43898294 to 43899109 815 + pseudogene predicted gene 8241
Gm26352 1 43902928 to 43903052 124 + snoRNA gene predicted gene, 26352
Gm24180 1 43918777 to 43918886 109 - miRNA gene predicted gene, 24180
Cpgi222 1 43933515 to 43934653 1138 CpG island CpG island 222
Tssr6550 1 43933608 to 43933626 18 + TSS region transcription start site region 6550
Tssr6551 1 43933680 to 43933694 14 + TSS region transcription start site region 6551
Tssr11507 1 43933837 to 43933914 77 - TSS region transcription start site region 11507
Tpp2 1 43933865 to 44003000 69135 + protein coding gene tripeptidyl peptidase II
Tssr6552 1 43933980 to 43934076 96 + TSS region transcription start site region 6552
Tssr6553 1 43934757 to 43934761 4 + TSS region transcription start site region 6553
Tssr6554 1 43958819 to 43958825 6 + TSS region transcription start site region 6554
Tssr6555 1 43969859 to 43969865 6 + TSS region transcription start site region 6555
Tssr6556 1 43983179 to 43983193 14 + TSS region transcription start site region 6556
Tssr6557 1 43983520 to 43983544 24 + TSS region transcription start site region 6557
Tssr6558 1 43985042 to 43985046 4 + TSS region transcription start site region 6558
D1Dcr33 1 44007822 to 44007919 97 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 33
Mettl21c 1 44009408 to 44020034 10626 - protein coding gene methyltransferase like 21C
Gm15838 1 44018470 to 44018649 179 - pseudogene predicted gene 15838
Tssr11508 1 44019929 to 44019940 11 - TSS region transcription start site region 11508
Gm8251 1 44055952 to 44061936 5984 - protein coding gene predicted gene 8251
Tssr11509 1 44079662 to 44079668 6 - TSS region transcription start site region 11509
Tssr11510 1 44079742 to 44079749 7 - TSS region transcription start site region 11510
Tex30 1 44086613 to 44102441 15828 - protein coding gene testis expressed 30
Gm29247 1 44091463 to 44110790 19327 - unclassified non-coding RNA gene predicted gene 29247
Tssr6559 1 44101636 to 44101641 5 + TSS region transcription start site region 6559
Tssr11511 1 44101637 to 44101649 12 - TSS region transcription start site region 11511
Cpgi223 1 44101644 to 44102766 1122 CpG island CpG island 223
Tssr11512 1 44101653 to 44101659 6 - TSS region transcription start site region 11512
Tssr11513 1 44101661 to 44101673 12 - TSS region transcription start site region 11513
Tssr11514 1 44101982 to 44101996 14 - TSS region transcription start site region 11514
Tssr11515 1 44102341 to 44102344 3 - TSS region transcription start site region 11515
Tssr11516 1 44102377 to 44102398 21 - TSS region transcription start site region 11516
Tssr11517 1 44102417 to 44102428 11 - TSS region transcription start site region 11517
Tssr11518 1 44102433 to 44102448 15 - TSS region transcription start site region 11518
Tssr11519 1 44102470 to 44102475 5 - TSS region transcription start site region 11519
Poglut2 1 44106546 to 44118808 12262 - protein coding gene protein O-glucosyltransferase 2
Cpgi224 1 44118376 to 44118939 563 CpG island CpG island 224
Tssr11520 1 44118711 to 44118722 11 - TSS region transcription start site region 11520
Tssr11521 1 44118757 to 44118816 59 - TSS region transcription start site region 11521
Tssr6560 1 44118951 to 44119009 58 + TSS region transcription start site region 6560
Bivm 1 44118962 to 44144771 25809 + protein coding gene basic, immunoglobulin-like variable motif containing
Cpgi225 1 44119194 to 44120113 919 CpG island CpG island 225
Tssr6561 1 44119451 to 44119519 68 + TSS region transcription start site region 6561
Tssr6562 1 44119952 to 44119985 33 + TSS region transcription start site region 6562
Tssr6563 1 44120088 to 44120102 14 + TSS region transcription start site region 6563
Cpgi226 1 44147446 to 44148297 851 CpG island CpG island 226
Shm3 1 44147744 to 62907723 18759979 QTL sperm head morphology 3
Shm1 1 44147744 to 50777776 6630032 QTL sperm head morphology 1
Ercc5 1 44147744 to 44181260 33516 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 5
Tssr6564 1 44147873 to 44147934 61 + TSS region transcription start site region 6564
Tssr6565 1 44147937 to 44147952 15 + TSS region transcription start site region 6565